View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_22 (Length: 234)
Name: NF4127_high_22
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5038304 - 5038523
Alignment:
| Q |
1 |
ttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttttttgtggctgtttgtggagtttctggtatttgagtgcctgttgtattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5038304 |
ttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttttttgtggctgtttgtggagtttctggtatttgagtgcccgttgtattg |
5038403 |
T |
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| Q |
101 |
ttcttgtgctgctgcccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaataagcaacacaggcgttgga |
200 |
Q |
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| T |
5038404 |
ttcttgtgctgctgcccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaataagcaacacaggcgttgga |
5038503 |
T |
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| Q |
201 |
caagataatcatgtagaaac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
5038504 |
caagataatcatgtagaaac |
5038523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 34514899 - 34514725
Alignment:
| Q |
1 |
ttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttttttgtggctgtttgtggagtttctggtatttgagtgcctgttgtattg |
100 |
Q |
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| T |
34514899 |
ttttctggtttttgcttcttacaggctttctgtcatgcgttgtgggagct-ttttgttgctgtttgtggggtttctggtatttcagtgtctgtcgtattg |
34514801 |
T |
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| Q |
101 |
ttcttgtgctgctgcccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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| T |
34514800 |
ttcttg---tgctgcccgcgagtttttgttgtgtttcttgcacacgcttg-tgtgaataaaatttgctgattctaaaaaa |
34514725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 11889347 - 11889406
Alignment:
| Q |
121 |
agtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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| T |
11889347 |
agttttagttgtgttacttacacgcgctcgttgtgaataaattttgctgattctaaaaaa |
11889406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 34799776 - 34799727
Alignment:
| Q |
131 |
gtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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| T |
34799776 |
gtgtttcttacacgcgctcgtagtgaatcaaatttgctgattctaaaaaa |
34799727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 47644473 - 47644294
Alignment:
| Q |
1 |
ttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttttttgtggctgtttgtggagtttctggtatttgagtgcctg-ttgtatt |
99 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||| || ||||| ||||||| |
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| T |
47644473 |
ttttctggtttttgcttcctacacgcttgctgtcatgcgctgagggagcttttttgttgctgtttgtgaggtttctggtatttcagcgcctgtttgtatt |
47644374 |
T |
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| Q |
100 |
gttcttgtgctgctgcccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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| T |
47644373 |
gttcctgtgctgctgtccgtgag-ttttgttgtgtttcttgcacacgctcgttgcgaataaattttactgattctaaaaaa |
47644294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 20702149 - 20702095
Alignment:
| Q |
124 |
ttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaa |
178 |
Q |
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| T |
20702149 |
ttttgttgcgttccttgcacgcactcgttgtgaataaattttgctgattctaaaa |
20702095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 16210600 - 16210672
Alignment:
| Q |
108 |
gctgctgcccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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| T |
16210600 |
gctgctggccgcgagttttagttgtgtttcttgcacgctctcgttgtgaataaattttgccgattctaaaaaa |
16210672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 27754266 - 27754330
Alignment:
| Q |
116 |
ccgcaagtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattctaaaaaa |
180 |
Q |
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|||| ||||||| |||| ||||||||||| || || ||||||||||||||| | |||||||||| |
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| T |
27754266 |
ccgcgagttttttgtgtgcttcttgcacacacttgtcgtgaataaaatttgccgtttctaaaaaa |
27754330 |
T |
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