View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4127_high_3 (Length: 488)
Name: NF4127_high_3
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 46557765 - 46557302
Alignment:
| Q |
18 |
aattggtattagttaaatttgtttgaataacactcaatatctttatcactacaaataagattccgtatttgtatgccatgatatttttaaattctattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46557765 |
aattggtattagttaaatttgtttgaataacactcagtatctttatcactacaaatacgattccgtatttgtatgccatgatgtttttaaattctattat |
46557666 |
T |
|
| Q |
118 |
aaggtgataatgatgataactttatattattctggaaagatctaggaatttctaacgatattctcctcccattcttcttcgtgatcaccttttatatacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46557665 |
aaggtgataatgatgataactttatattattctggaaagatctaggaatttctaacgatattctcctcccattcttcttcgtgatcaccttttatatacc |
46557566 |
T |
|
| Q |
218 |
aaaattaaccttaaagcct---tgttcttaattagtaacctcctctctttctctttctaaacatcgctcttgtttcttttcacttcccaatggaagcaac |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46557565 |
aaaattaaccttaaagcctccttgttcttaattagtaacctcctctctttctctttctaaacatcgctcttgtttcttttcacttcccaatggaagcaac |
46557466 |
T |
|
| Q |
315 |
agaaacaagacccgaactagtagttgttcaagaagcaccaccacctctaccaccagaagaacaacaattacaacctctcatgtgcaaggtaaatcaaaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46557465 |
agaaacaagacccgaactagtagttgttcaagaagcaccaccacctctaccaccagaagaacaacaattacaacctctcatgtgcaaggtaaatcaaaca |
46557366 |
T |
|
| Q |
415 |
ttcattcattcctctgcatgcggttttaataactctcttttactacttctaacatacgtctctg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46557365 |
ttcattcattcctctgcatgcggttttaataactctcttttactacttctaacatacgtctctg |
46557302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University