View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_6 (Length: 413)
Name: NF4127_high_6
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 183 - 397
Target Start/End: Complemental strand, 22777268 - 22777054
Alignment:
| Q |
183 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggttgatcctaatcatgataatattatacatcctttactcttccaatcttcttttattaacc |
282 |
Q |
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| T |
22777268 |
aaaccaaatgtactcattcaggcaacgtatcatcacttggctgatcctaatcatgataatattatacatcctttactcttccaatcttcttttattaacc |
22777169 |
T |
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| Q |
283 |
actgaaaagcaaggctgttccacgaacgttcgtttagatgcagccgcagatgaaaagcttgagatgattagtactggaaatatatccaaaactacatcat |
382 |
Q |
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| T |
22777168 |
actgaaaaacgagattgttccaccaacgttcgtttagatgcagccgcagatgaaaaacttgagatgattagtactggaaatatatccaaaactacatcat |
22777069 |
T |
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| Q |
383 |
ctataattgaaaaag |
397 |
Q |
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||||||||||||||| |
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| T |
22777068 |
ctataattgaaaaag |
22777054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 22777401 - 22777284
Alignment:
| Q |
17 |
ctgtgatccgaacaattctgagattgaacgcccttccaaccaccgtgtttctccattccaacacttggaagcaaaattattaacccaacaatctgaaaga |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||| ||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
22777401 |
ctgtgatccgaacaattctgagattgaacgtccttcccaccaccgtctttcttcgttccaacacctggaaacaaaactattaacccaacaatctgaaaga |
22777302 |
T |
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| Q |
117 |
aactcgaagaatctgaag |
134 |
Q |
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|||||||||||||||||| |
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| T |
22777301 |
aactcgaagaatctgaag |
22777284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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