View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_7 (Length: 401)
Name: NF4127_high_7
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 25719510 - 25719889
Alignment:
| Q |
18 |
acacaacactgttaataatttaagaaaatgaaagtgatgaaatgtaaccactagtgtcggtgttaggcacct-atgcgcctttaatcagaaattttattg |
116 |
Q |
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||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||| ||||| || ||| |
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| T |
25719510 |
acacaacgcttttaataatttaagaaaaagaaagtgatttaatgtaaccactagtgtcggtattaggcacctgacgcgcctttaatctgaaatgtttttg |
25719609 |
T |
|
| Q |
117 |
ctatacatagatagtgttaatgcc---ctatacatgtgctaccaaactcttatgctaatgacatgccaattgggtggatatttcaaccaggttaggattt |
213 |
Q |
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||| ||| | || |||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25719610 |
cta--catggctaatgttaatgccgccctatacatttgctaacaaactcttatgctaatgacataccaattgggtggatatttcaaccaggttaggattt |
25719707 |
T |
|
| Q |
214 |
ttgattgatttcctatcacatgctgcaatagtcggttttatggggggagctgccatcacaatagctcttcaacagcttaagggtttccttgggattcaaa |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25719708 |
ttgattgatttcctatcacatgctgcaatagtcggttttatggggggagctgccatcacaatagctcttcaacaacttaagggtttccttgggattcaaa |
25719807 |
T |
|
| Q |
314 |
agttcactaagaaaaccgatataatatctgtgatgaattcagtattctcatcagcccatcatggagtatgctttctttctct |
395 |
Q |
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| T |
25719808 |
agttcacaaagaaaaccgatataatatctgtgatgaattcagtattctcatcagcccatcatggagtatgctttctttctct |
25719889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 7228331 - 7228368
Alignment:
| Q |
18 |
acacaacactgttaataatttaagaaaatgaaagtgat |
55 |
Q |
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| T |
7228331 |
acacaacactgataataatttaagaaaatgaaagtgat |
7228368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 29587688 - 29587726
Alignment:
| Q |
30 |
taataatttaagaaaatgaaagtgatgaaatgtaaccac |
68 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
29587688 |
taataatttaagaaaatggaagtgattaaatgtaaccac |
29587726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 383
Target Start/End: Original strand, 33298547 - 33298731
Alignment:
| Q |
205 |
ttaggatttttgattgatttcctatcacatgctgcaatagtcggttttatggggggagctgccatcacaatagctcttcaacagcttaagggtttccttg |
304 |
Q |
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||||| || |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||| |
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| T |
33298547 |
ttagggttcttgattgacttcctatcccatgctgctattgtcggttttatggggggtgctgctatcacaattgcccttcaacagctaaagggtttccttg |
33298646 |
T |
|
| Q |
305 |
ggat------tcaaaagttcactaagaaaaccgatataatatctgtgatgaattcagtattctcatcagcccatcatggagtatg |
383 |
Q |
| |
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| || | ||| |||||| | |||||| ||||| || || ||| |||| ||||||||||||||||| | ||||||||||| |
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|
| T |
33298647 |
gcattaaaactaaaatgttcacaacgaaaactgatattatctccgtgttgaaggcagtattctcatcagccaaacatggagtatg |
33298731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 4240967 - 4240931
Alignment:
| Q |
28 |
gttaataatttaagaaaatgaaagtgatgaaatgtaa |
64 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4240967 |
gttaataatttaagaaaatgaaagtgatgaaatgtaa |
4240931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 16330989 - 16331027
Alignment:
| Q |
30 |
taataatttaagaaaatgaaagtgatgaaatgtaaccac |
68 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
16330989 |
taataatttaagaaaatgaaaatgattaaatgtaaccac |
16331027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 1493297 - 1493418
Alignment:
| Q |
214 |
ttgattgatttcctatcacatgctgcaatagtcggttttatggggggagctgccatcacaatagctcttcaacagcttaagggtttccttgggattcaaa |
313 |
Q |
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|||||||| |||||||| |||||||| || || || || ||||| ||||||||||| || || || || ||||| ||||| ||| | ||||| || ||| |
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| T |
1493297 |
ttgattgacttcctatctcatgctgccattgttggattcatgggtggagctgccattactattgcactccaacaacttaaaggtcttcttggtataaaaa |
1493396 |
T |
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| Q |
314 |
agttcactaagaaaaccgatat |
335 |
Q |
| |
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| ||||| |||||||| ||||| |
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| T |
1493397 |
aattcaccaagaaaactgatat |
1493418 |
T |
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