View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_8 (Length: 387)
Name: NF4127_high_8
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 36420688 - 36420333
Alignment:
| Q |
11 |
catcatcatctgaaaatttctttggtttggtttggtgagttagggtccactcatctcattattttatggcatgcattgttgacacggatgaatgaaaatg |
110 |
Q |
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| T |
36420688 |
catcatcatctgaaaatttctttggtttggtttggtgagttagggtccactcatctcattattttatggcatgcattgttgacacggatgaatgaaaatg |
36420589 |
T |
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| Q |
111 |
actcactcacttgtcttgctattatttatnnnnnnncctctgaattatgttggaatttgttttgtttattatgttaatgttgcctaattaaacacgggtc |
210 |
Q |
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| T |
36420588 |
actcactcacttgtcttgctattatttataaaaaaacctctgaattatgttggaatttgttttgtttat---gttaatgttgcctaattaaacacgggtc |
36420492 |
T |
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| Q |
211 |
tgtctgagtgctagtctgctcagattttcactgcttactagagttagatttctaaatccatttaaaaatgttatacaattaaaacaatacatttcaatca |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36420491 |
tgtccgagtgctagtctgctcagattttcactgcttactagagttagatttctaaatccatttaaaaatgttatacaattaaaacaatacatttaaatca |
36420392 |
T |
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| Q |
311 |
gtaaagtcgaaacgataaaagaattgagcactaatctcctatcaaatacatagctcaat |
369 |
Q |
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| T |
36420391 |
gtaaagtcgaaacgataaaagaattgagcactaatctcctatcaaatacatagctcaat |
36420333 |
T |
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