View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_1 (Length: 640)
Name: NF4127_low_1
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 299 - 625
Target Start/End: Complemental strand, 43394213 - 43393887
Alignment:
| Q |
299 |
ggaatcctaaatcctgaacgctaaaccctaaaacaataaaattcaaagcttacgtttgaatgacgaaacttggtgcactgacgagatgcaacttttggga |
398 |
Q |
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| T |
43394213 |
ggaatcctaaatcctgaacgctaaaccctaaaacaataaaattcaaagcttatgtttgaatgacgaaacttggtgcactgacgagatgcaacttttggga |
43394114 |
T |
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| Q |
399 |
tttagctatcgatttttatagtgaactcttctaaaataatgttgaagtttaccaaaattctaaattaaatgttaagttttataaatggtgatacattgat |
498 |
Q |
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| T |
43394113 |
tttagctatcgatttttatagtgaactcttctaaaataatgttgaagtttaccaaaattctaaattaaatattaagttttataaatggtgatacattgat |
43394014 |
T |
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| Q |
499 |
gtttgcacttgaacttttagaaagaacaagaaccacataaagtcttgtaagaaaatcttattagtagacctactagaagtcacttacacctctttcaaaa |
598 |
Q |
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| T |
43394013 |
gtttgcacttgaacttttagaaagaacaagaaccacataaagtcttgtaagaaaatcttattagtagacctactagaagtcacttacacctctttcaaaa |
43393914 |
T |
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| Q |
599 |
agtcacttacaccaaaatgtgcatcat |
625 |
Q |
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| T |
43393913 |
agtcacttacaccaaaatgtacatcat |
43393887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 43394578 - 43394394
Alignment:
| Q |
18 |
gatcaaaaatctagtttaatattattatcattgtctcgcacatgattatcttccgttgagataatttgtgacagnnnnnnnn-tcatttgtcattacttg |
116 |
Q |
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| T |
43394578 |
gatcaaaaatctagtttaatattattatcattgtctcgcacatgattatcttccgttgagataatttgtgacagaaaaaaaaatcatttgtcattacttg |
43394479 |
T |
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| Q |
117 |
ttttaaaaatatataactcaaataattgtaaatttagggagaaatgataggaggtacaataaagaggctatttagacatatcaaa |
201 |
Q |
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| T |
43394478 |
ttttaaaaatatataactcaaataattgtaaatatagggagaaatgataggaggtacaataaagaggctatttagacatatcaaa |
43394394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 517
Target Start/End: Complemental strand, 37768401 - 37768344
Alignment:
| Q |
460 |
aaattaaatgttaagttttataaatggtgatacattgatgtttgcacttgaactttta |
517 |
Q |
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| T |
37768401 |
aaataaaatgttaagttttacaaatagtgatctattgatatttgcacttgaattttta |
37768344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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