View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_low_10 (Length: 387)

Name: NF4127_low_10
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_low_10
NF4127_low_10
[»] chr8 (38 HSPs)
chr8 (58-373)||(41409371-41409686)
chr8 (1-58)||(21649183-21649240)
chr8 (5-57)||(35701846-35701898)
chr8 (5-60)||(27300343-27300398)
chr8 (7-57)||(23708976-23709026)
chr8 (13-57)||(4148682-4148726)
chr8 (13-57)||(22203242-22203286)
chr8 (5-57)||(28713093-28713145)
chr8 (5-57)||(28720440-28720492)
chr8 (5-57)||(28728082-28728134)
chr8 (5-61)||(34838289-34838345)
chr8 (12-57)||(5742683-5742728)
chr8 (5-57)||(18549979-18550031)
chr8 (5-57)||(28156203-28156255)
chr8 (5-57)||(32674251-32674303)
chr8 (13-57)||(34578404-34578448)
chr8 (3-58)||(10591890-10591945)
chr8 (19-58)||(36675335-36675374)
chr8 (20-57)||(13924022-13924059)
chr8 (5-57)||(22836158-22836210)
chr8 (13-57)||(37784401-37784445)
chr8 (5-61)||(40459781-40459837)
chr8 (17-60)||(25987818-25987861)
chr8 (20-58)||(6243044-6243082)
chr8 (1-59)||(14531619-14531677)
chr8 (23-57)||(25430657-25430691)
chr8 (5-59)||(29509264-29509318)
chr8 (5-59)||(35937531-35937585)
chr8 (5-54)||(6105455-6105504)
chr8 (13-54)||(18411322-18411363)
chr8 (20-57)||(37471654-37471691)
chr8 (20-57)||(41776186-41776223)
chr8 (5-57)||(9314411-9314463)
chr8 (19-59)||(13106475-13106515)
chr8 (20-60)||(32777893-32777933)
chr8 (5-57)||(34641545-34641597)
chr8 (17-57)||(36969708-36969748)
chr8 (1-57)||(43602438-43602494)
[»] chr5 (30 HSPs)
chr5 (1-57)||(18729304-18729360)
chr5 (1-57)||(3031834-3031890)
chr5 (5-57)||(39032623-39032675)
chr5 (5-57)||(12891115-12891167)
chr5 (13-57)||(25585483-25585527)
chr5 (5-57)||(29765830-29765882)
chr5 (5-56)||(37821144-37821195)
chr5 (13-57)||(14522991-14523035)
chr5 (5-57)||(20985548-20985600)
chr5 (20-58)||(38387609-38387647)
chr5 (20-57)||(12203158-12203195)
chr5 (5-57)||(24330001-24330053)
chr5 (5-57)||(34693235-34693287)
chr5 (5-57)||(35578860-35578912)
chr5 (5-63)||(22098249-22098308)
chr5 (5-60)||(30574396-30574451)
chr5 (5-59)||(4820153-4820207)
chr5 (1-58)||(16690498-16690556)
chr5 (5-57)||(1293104-1293157)
chr5 (5-57)||(2629818-2629871)
chr5 (5-58)||(9599747-9599800)
chr5 (1-57)||(13089796-13089853)
chr5 (4-57)||(14914372-14914425)
chr5 (17-58)||(31748335-31748376)
chr5 (20-57)||(38919863-38919900)
chr5 (20-57)||(43153083-43153120)
chr5 (5-57)||(9594478-9594530)
chr5 (1-57)||(33393634-33393690)
chr5 (18-62)||(40584248-40584292)
chr5 (18-58)||(42225798-42225838)
[»] chr6 (19 HSPs)
chr6 (9-66)||(27790258-27790315)
chr6 (5-57)||(34792022-34792074)
chr6 (20-59)||(16121161-16121200)
chr6 (20-57)||(2165323-2165360)
chr6 (20-57)||(2176956-2176993)
chr6 (5-57)||(3339518-3339570)
chr6 (15-58)||(6997579-6997622)
chr6 (20-58)||(9395360-9395398)
chr6 (19-57)||(10557409-10557447)
chr6 (5-59)||(25924883-25924937)
chr6 (20-58)||(32135454-32135492)
chr6 (20-57)||(17442833-17442870)
chr6 (17-58)||(19712354-19712395)
chr6 (20-57)||(25567513-25567550)
chr6 (5-57)||(8778891-8778943)
chr6 (5-57)||(19789095-19789147)
chr6 (5-60)||(25811857-25811912)
chr6 (5-57)||(28965859-28965911)
chr6 (5-57)||(32729889-32729941)
[»] chr2 (46 HSPs)
chr2 (5-58)||(5852473-5852526)
chr2 (5-59)||(44897624-44897678)
chr2 (1-57)||(12208442-12208498)
chr2 (1-57)||(19637229-19637285)
chr2 (1-57)||(19835822-19835878)
chr2 (5-57)||(27529529-27529581)
chr2 (5-57)||(30339993-30340045)
chr2 (5-57)||(34141442-34141494)
chr2 (5-60)||(18749382-18749437)
chr2 (1-58)||(11728136-11728193)
chr2 (1-58)||(35203764-35203821)
chr2 (5-57)||(12256901-12256953)
chr2 (5-57)||(26387878-26387930)
chr2 (5-54)||(17999749-17999798)
chr2 (5-58)||(25094351-25094404)
chr2 (5-54)||(28679131-28679180)
chr2 (5-54)||(38027634-38027683)
chr2 (5-57)||(40721771-40721823)
chr2 (20-59)||(27538939-27538978)
chr2 (5-59)||(6328665-6328719)
chr2 (1-59)||(35705932-35705989)
chr2 (13-58)||(11126462-11126507)
chr2 (5-62)||(34373000-34373057)
chr2 (1-57)||(3839410-3839466)
chr2 (5-57)||(11152718-11152770)
chr2 (5-57)||(29168725-29168777)
chr2 (3-59)||(33559637-33559693)
chr2 (20-59)||(24727424-24727463)
chr2 (20-54)||(11828843-11828877)
chr2 (20-58)||(45202155-45202193)
chr2 (5-54)||(3366416-3366465)
chr2 (5-62)||(7498010-7498067)
chr2 (18-59)||(15123968-15124009)
chr2 (24-57)||(22296156-22296189)
chr2 (5-58)||(36376868-36376921)
chr2 (5-54)||(43791821-43791870)
chr2 (5-57)||(4723566-4723618)
chr2 (5-57)||(6666020-6666072)
chr2 (5-57)||(20247886-20247938)
chr2 (5-57)||(36909862-36909914)
chr2 (23-59)||(38598375-38598411)
chr2 (1-56)||(39147766-39147822)
chr2 (18-58)||(40874293-40874333)
chr2 (5-57)||(42141613-42141665)
chr2 (5-57)||(42554776-42554828)
chr2 (5-57)||(44484675-44484727)
[»] chr7 (37 HSPs)
chr7 (5-57)||(48639402-48639454)
chr7 (5-58)||(47944981-47945035)
chr7 (5-58)||(47950411-47950465)
chr7 (5-57)||(41538482-41538534)
chr7 (5-53)||(41910204-41910252)
chr7 (7-57)||(27704435-27704485)
chr7 (5-59)||(45335860-45335914)
chr7 (12-59)||(2600560-2600607)
chr7 (12-58)||(11789717-11789763)
chr7 (10-56)||(23034337-23034383)
chr7 (16-62)||(40207830-40207876)
chr7 (5-54)||(640395-640444)
chr7 (5-58)||(30538625-30538678)
chr7 (5-57)||(11070228-11070280)
chr7 (20-60)||(27866560-27866600)
chr7 (5-57)||(28548240-28548292)
chr7 (13-57)||(35491438-35491482)
chr7 (20-59)||(25272600-25272639)
chr7 (5-60)||(33050180-33050235)
chr7 (19-61)||(34349060-34349102)
chr7 (19-57)||(48522156-48522194)
chr7 (5-58)||(37969930-37969983)
chr7 (5-58)||(41458919-41458972)
chr7 (5-57)||(5378627-5378679)
chr7 (1-57)||(33341140-33341196)
chr7 (1-57)||(44511139-44511195)
chr7 (5-56)||(17039158-17039209)
chr7 (24-59)||(33465066-33465101)
chr7 (20-59)||(37848643-37848682)
chr7 (5-59)||(2347078-2347132)
chr7 (18-59)||(7295448-7295489)
chr7 (20-57)||(24380744-24380781)
chr7 (1-58)||(25614836-25614893)
chr7 (5-62)||(30864436-30864493)
chr7 (5-54)||(37385252-37385301)
chr7 (13-57)||(1709284-1709328)
chr7 (5-57)||(4971290-4971342)
[»] chr3 (52 HSPs)
chr3 (5-57)||(14839064-14839116)
chr3 (4-59)||(54233486-54233541)
chr3 (5-58)||(30664502-30664555)
chr3 (5-57)||(2280177-2280229)
chr3 (1-57)||(9159051-9159107)
chr3 (5-57)||(29555857-29555909)
chr3 (12-56)||(44689793-44689837)
chr3 (13-59)||(17118395-17118441)
chr3 (13-57)||(42888799-42888843)
chr3 (1-57)||(45517672-45517728)
chr3 (7-59)||(55264815-55264867)
chr3 (1-60)||(52100258-52100317)
chr3 (5-59)||(1402648-1402702)
chr3 (12-62)||(9027608-9027658)
chr3 (5-59)||(11327106-11327160)
chr3 (5-59)||(16295462-16295516)
chr3 (13-55)||(38471644-38471686)
chr3 (5-59)||(42643233-42643287)
chr3 (20-57)||(29057659-29057696)
chr3 (20-57)||(29846914-29846951)
chr3 (13-58)||(38296689-38296734)
chr3 (5-58)||(47141619-47141672)
chr3 (1-58)||(50280102-50280159)
chr3 (13-57)||(7351665-7351709)
chr3 (13-57)||(33971883-33971927)
chr3 (5-57)||(36301227-36301279)
chr3 (5-57)||(50025717-50025769)
chr3 (5-60)||(19418176-19418231)
chr3 (5-60)||(41877685-41877740)
chr3 (19-61)||(7949787-7949829)
chr3 (16-58)||(14847548-14847590)
chr3 (19-57)||(49361857-49361895)
chr3 (19-57)||(54134852-54134890)
chr3 (5-57)||(16479632-16479684)
chr3 (5-58)||(25559703-25559756)
chr3 (313-362)||(30669819-30669868)
chr3 (20-57)||(35368622-35368659)
chr3 (5-53)||(39629857-39629906)
chr3 (20-57)||(48117347-48117384)
chr3 (20-57)||(48490536-48490573)
chr3 (13-58)||(48944737-48944782)
chr3 (20-57)||(50745560-50745597)
chr3 (5-57)||(3957830-3957881)
chr3 (17-61)||(6178457-6178500)
chr3 (5-57)||(8254027-8254079)
chr3 (5-57)||(32931937-32931989)
chr3 (5-57)||(36818956-36819008)
chr3 (5-57)||(36869856-36869908)
chr3 (20-60)||(43149366-43149406)
chr3 (13-57)||(48205045-48205089)
chr3 (5-57)||(49761205-49761257)
chr3 (17-57)||(52963347-52963387)
[»] chr1 (45 HSPs)
chr1 (5-60)||(12990488-12990543)
chr1 (3-57)||(41564897-41564951)
chr1 (5-57)||(8577521-8577573)
chr1 (5-56)||(5574278-5574329)
chr1 (1-59)||(6396325-6396383)
chr1 (5-59)||(23400008-23400062)
chr1 (5-57)||(1100217-1100269)
chr1 (5-58)||(31244752-31244805)
chr1 (13-66)||(40118742-40118795)
chr1 (5-66)||(41425233-41425294)
chr1 (5-57)||(22674712-22674764)
chr1 (12-60)||(26760559-26760607)
chr1 (20-59)||(16252782-16252821)
chr1 (5-60)||(50795999-50796054)
chr1 (5-58)||(48390096-48390148)
chr1 (5-57)||(578804-578856)
chr1 (1-57)||(11038262-11038318)
chr1 (5-57)||(12999841-12999893)
chr1 (5-57)||(21854483-21854535)
chr1 (1-57)||(24158650-24158706)
chr1 (12-60)||(28457373-28457421)
chr1 (20-56)||(50460735-50460771)
chr1 (5-48)||(11897183-11897226)
chr1 (20-63)||(35030785-35030828)
chr1 (17-60)||(49020435-49020478)
chr1 (23-57)||(30414875-30414909)
chr1 (12-54)||(48336464-48336506)
chr1 (5-39)||(48962004-48962038)
chr1 (5-57)||(649768-649821)
chr1 (5-57)||(49615296-49615346)
chr1 (5-61)||(13813554-13813610)
chr1 (312-360)||(15284163-15284210)
chr1 (5-57)||(17167849-17167901)
chr1 (5-61)||(25098807-25098863)
chr1 (5-57)||(26910432-26910484)
chr1 (5-57)||(27787489-27787541)
chr1 (19-59)||(27954241-27954281)
chr1 (5-57)||(35972823-35972875)
chr1 (5-60)||(37685328-37685383)
chr1 (5-60)||(37700135-37700190)
chr1 (5-57)||(39815346-39815398)
chr1 (5-57)||(42256460-42256512)
chr1 (20-60)||(47059913-47059953)
chr1 (31-63)||(49446843-49446875)
chr1 (1-57)||(49645362-49645418)
[»] scaffold0014 (1 HSPs)
scaffold0014 (5-57)||(145061-145113)
[»] scaffold0514 (1 HSPs)
scaffold0514 (5-59)||(1864-1918)
[»] chr4 (52 HSPs)
chr4 (4-57)||(23133555-23133608)
chr4 (1-57)||(29863551-29863607)
chr4 (5-57)||(36110134-36110186)
chr4 (5-57)||(50291282-50291334)
chr4 (5-56)||(38960679-38960730)
chr4 (12-55)||(43307395-43307438)
chr4 (5-57)||(4877966-4878019)
chr4 (5-57)||(1987732-1987784)
chr4 (5-57)||(4577557-4577609)
chr4 (20-60)||(24310544-24310584)
chr4 (5-57)||(31318753-31318805)
chr4 (5-57)||(45418067-45418119)
chr4 (5-57)||(46355312-46355364)
chr4 (20-59)||(7795023-7795062)
chr4 (6-57)||(26442410-26442461)
chr4 (13-60)||(55960697-55960744)
chr4 (5-59)||(3475867-3475921)
chr4 (7-57)||(29577457-29577507)
chr4 (20-57)||(1868916-1868953)
chr4 (5-57)||(6093626-6093678)
chr4 (1-57)||(22893869-22893924)
chr4 (1-57)||(22945537-22945592)
chr4 (18-58)||(33914369-33914409)
chr4 (13-57)||(35037609-35037653)
chr4 (20-60)||(36871191-36871231)
chr4 (5-57)||(45521598-45521650)
chr4 (5-57)||(48650275-48650327)
chr4 (1-59)||(5622456-5622514)
chr4 (18-57)||(43511679-43511718)
chr4 (7-57)||(35824127-35824177)
chr4 (5-63)||(36081793-36081851)
chr4 (20-57)||(9828006-9828043)
chr4 (5-58)||(14090069-14090122)
chr4 (20-57)||(31413809-31413846)
chr4 (5-54)||(41170776-41170824)
chr4 (17-58)||(46282619-46282660)
chr4 (5-58)||(51224857-51224910)
chr4 (23-56)||(54848150-54848183)
chr4 (5-57)||(55609184-55609236)
chr4 (17-57)||(1015119-1015159)
chr4 (19-59)||(4949267-4949307)
chr4 (5-57)||(5208346-5208398)
chr4 (18-58)||(6256481-6256521)
chr4 (18-58)||(8810570-8810610)
chr4 (5-57)||(15638161-15638213)
chr4 (5-33)||(18944303-18944331)
chr4 (5-57)||(29513715-29513767)
chr4 (1-53)||(37775442-37775494)
chr4 (5-57)||(51107460-51107512)
chr4 (1-57)||(53781852-53781907)
chr4 (5-57)||(54803347-54803399)
chr4 (5-57)||(56025256-56025308)
[»] scaffold0024 (2 HSPs)
scaffold0024 (5-54)||(48657-48706)
scaffold0024 (1-57)||(60469-60525)
[»] scaffold0651 (1 HSPs)
scaffold0651 (5-57)||(4865-4917)
[»] scaffold0172 (1 HSPs)
scaffold0172 (5-63)||(16969-17027)
[»] scaffold0286 (1 HSPs)
scaffold0286 (20-57)||(17049-17086)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-59)||(9774-9833)
[»] scaffold0020 (1 HSPs)
scaffold0020 (5-58)||(155905-155958)
[»] scaffold0504 (1 HSPs)
scaffold0504 (20-56)||(11159-11195)
[»] scaffold0016 (1 HSPs)
scaffold0016 (5-57)||(204464-204516)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-65)||(18587-18647)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-57)||(5089-5141)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 58 - 373
Target Start/End: Original strand, 41409371 - 41409686
Alignment:
Q  58 attaaagaaggctcgccaaactaaccaaatttttgtgcgtatatgtataaagttaaaacgtgaacttttatttggtgccgtagatgtactactacacttc 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41409371 attaaagaaggctcgccaaactaaccaaatttttgtgcgtatatgtataaagttaaaacgtgaacttttatttggtgccgcagatgtactactacacttc 41409470  T
Q  158 gtagttccataaatcttcaaaaatgtatttatagttatttaaagactcaatgaatatgcttagtccccttaagcatgtagtcaactaccggcgcatatga 257  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41409471 gtagttccataaatcttcaaaaatgtatttatagttatttacagactcaatgaatatgcttagtccccttaagcatgtagtcaactaccggcgcatatga 41409570  T
Q  258 aaaatttcgattagaagaatgaacccatcttgtgcgtccataaattcttcgacatagattagtcttcgttaatcgatgatgaaaatttcgtatcaatatc 357  Q
    |||| |||  || |||| | ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  41409571 aaaaattcagttggaaggaagaacccatcttgtgcgttcataaattctccgacatagattagtcgtcattaatcgacgatgaaaatttcgtatcaatatc 41409670  T
Q  358 atgatcatggaaaaag 373  Q
    ||||||| ||||||||    
T  41409671 atgatcacggaaaaag 41409686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21649183 - 21649240
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  21649183 tgaaagagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctca 21649240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 35701846 - 35701898
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35701846 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 35701898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 27300398 - 27300343
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27300398 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctcatt 27300343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23709026 - 23708976
Alignment:
Q  7 agaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  23709026 agaaggttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 23708976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 4148682 - 4148726
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  4148682 ttgtacaaaagttgtacaaaaatggttatacaaatatcatttctc 4148726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 22203242 - 22203286
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  22203242 ttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 22203286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 28713145 - 28713093
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  28713145 agagaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 28720492 - 28720440
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  28720492 agagaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 28728134 - 28728082
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  28728134 agagaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28728082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 34838289 - 34838345
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    ||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  34838289 agagaagattgtacaaaagttgtacaaaattggatgtacaaatatcatttctcatta 34838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5742683 - 5742728
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  5742683 gttgtacaaaagttgtaccaaaatggttgtacaaatatcatttctc 5742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 18550031 - 18549979
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||| |||||||||| || |||||||||||||||||    
T  18550031 agagaatgttgtacaaaagttatacaaaaatgattgtacaaatatcatttctc 18549979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 28156255 - 28156203
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  28156255 agagaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 28156203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 32674251 - 32674303
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  32674251 agagaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 32674303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 34578404 - 34578448
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
T  34578404 ttgttcaaaagttgtacaaaaatggttgtacaaatatcatttctc 34578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 10591890 - 10591945
Alignment:
Q  3 aaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||| |||||||||||||| || |||||| ||| ||||||||||||||||||    
T  10591890 aaagagaaagttgtacaaaagttatataaaaatagttgtacaaatatcatttctca 10591945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 36675374 - 36675335
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  36675374 aaaagttgtacaaaaatggttgtacaaatatcatttctca 36675335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13924059 - 13924022
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  13924059 aaagttgtacaaaaatggttgtacaaatatcatttctc 13924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 22836158 - 22836210
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||  ||||||||| |||||||||||||||||    
T  22836158 agagaaagttgtacaaaatttgtatgaaaatggttgtacaaatatcatttctc 22836210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 37784401 - 37784445
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||    
T  37784401 ttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 37784445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 40459781 - 40459837
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    |||||| |||||||||||||| ||| ||||| ||| ||||||| |||||||||||||    
T  40459781 agagaaagttgtacaaaagttataccaaaatagttgtacaaatttcatttctcatta 40459837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 25987818 - 25987861
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||| |||||||||| | ||||||||||||||||||    
T  25987818 acaaaagttgtaaaaaaatggttgttcaaatatcatttctcatt 25987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 6243082 - 6243044
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  6243082 aaagttgtacaaaaatgattgtacaaatatcatttctca 6243044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14531677 - 14531619
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| |||||||||||||| |   ||||| ||| |||||||||||||||||||    
T  14531677 tgaaagagaaagttgtacaaaagttatcataaaatagttgtacaaatatcatttctcat 14531619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 25430691 - 25430657
Alignment:
Q  23 gttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||| |||||||||||||||||    
T  25430691 gttgtacaaaaatggttgtacaaatatcatttctc 25430657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 29509318 - 29509264
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||||    
T  29509318 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcat 29509264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 35937531 - 35937585
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| ||||| ||||||||||   ||||||||| |||||||||||||||||||    
T  35937531 agagaaagttgtccaaaagttgttacaaaatggttgtacaaatatcatttctcat 35937585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 6105455 - 6105504
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| |||||  |||||||||| |||||||||| ||||||||||||||    
T  6105455 agagaaagttgtcaaaaagttgtaaaaaaatggttgtacaaatatcattt 6105504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 18411322 - 18411363
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  18411322 ttgtacaaaagttgtaccaaaattgttgtacaaatatcattt 18411363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 37471691 - 37471654
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||| || |||||||||||||||||    
T  37471691 aaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 41776223 - 41776186
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  41776223 aaagttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 9314463 - 9314411
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| ||||   ||||||| | |||||||||||||||||    
T  9314463 agagaaggttgtacaaaaattgtcataaaatggatgtacaaatatcatttctc 9314411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13106515 - 13106475
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  13106515 aaaagttgtccaaaaatggttgttcaaatatcatttctcat 13106475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 32777933 - 32777893
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  32777933 aaagttgtataaaaatggttgtacagatatcatttctcatt 32777893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 34641597 - 34641545
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||| |||||| || || |||||||||| |||||||||||||||||    
T  34641597 agagaaagttgcacaaaaattatataaaaatggttgtacaaatatcatttctc 34641545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36969708 - 36969748
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  36969708 acaaaagttgtaataaaattgttttacaaatatcatttctc 36969748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43602438 - 43602494
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||| | |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  43602438 tgaaagagcaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 43602494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18729304 - 18729360
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18729304 tgaaagagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 18729360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3031890 - 3031834
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  3031890 tgaaagagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 3031834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 39032623 - 39032675
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39032623 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 39032675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12891115 - 12891167
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  12891115 agagaatgttgtacaaaagttgtgcaaaaatggttgtacaaatatcatttctc 12891167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 25585483 - 25585527
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  25585483 ttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 25585527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 29765882 - 29765830
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  29765882 agagaaagttgtacaaaagttgtactaaaatggttgtacaaatatcatttctc 29765830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 37821144 - 37821195
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  37821144 agagaaggttgtacaaaagttgtataaaaatggttgtacgaatatcatttct 37821195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 14522991 - 14523035
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||    
T  14522991 ttgtaaaaaagttgtacaaaaatggttgtacaaatatcatttctc 14523035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20985548 - 20985600
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| || ||||||||||||| |||||||||||||||||    
T  20985548 agagaaagttgtacaaaaattatacaaaaatggttgtacaaatatcatttctc 20985600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 38387647 - 38387609
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  38387647 aaagttgtacaaaaatggttgtacaaatatcatttctca 38387609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 12203195 - 12203158
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12203195 aaagttgtacaaaaatggttgtacaaatatcatttctc 12203158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 24330001 - 24330053
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| |||||  || |||||||||||||||||    
T  24330001 agagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctc 24330053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 34693235 - 34693287
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||| |||||||||| || |||||||||| || |||||||||||||||||    
T  34693235 agagaagattgtacaaaaattatacaaaaatgattgtacaaatatcatttctc 34693287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 35578912 - 35578860
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||||||||||||||  || || |||||||| |||||    
T  35578912 agagaaggttgtacaaaagttgtacaaaaataattatataaatatcacttctc 35578860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 22098308 - 22098249
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcattaaa 63  Q
    |||||| ||||| |||||||||||   ||||||||| |||||||||||||||||||||||    
T  22098308 agagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctcattaaa 22098249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 30574396 - 30574451
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||||||||||||||   ||| ||||| ||||||||||||||||||||    
T  30574396 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcatt 30574451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 4820207 - 4820153
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||||||||||| |||   ||||||| | |||||||||||||||||||    
T  4820207 agagaaggttgtacaaaagatgtcataaaatggatgtacaaatatcatttctcat 4820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16690556 - 16690498
Alignment:
Q  1 tgaaagagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||| ||||| |||||||||||  | |||||||| ||||||||||||||||||    
T  16690556 tgaaagagaaagttgtcacaaaagttgttaagaaatggttgtacaaatatcatttctca 16690498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1293104 - 1293157
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| |||||||||||  |||||||||| |||||||||||||||||    
T  1293104 agagaaagttgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 1293157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 2629871 - 2629818
Alignment:
Q  5 agagaaggttgta-caaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||  ||||||||||  |||||||||| |||||||||||||||||    
T  2629871 agagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 9599747 - 9599800
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||||||||   ||| ||||| ||||||||||||||||||    
T  9599747 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctca 9599800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13089796 - 13089853
Alignment:
Q  1 tgaaagagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||||| |||||||||||  |||||||||| | |||||||||||||||    
T  13089796 tgaaagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 13089853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 14914425 - 14914372
Alignment:
Q  4 aagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||| ||||| ||||||||||   ||||||||| |||||||||||||||||    
T  14914425 aagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 31748376 - 31748335
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||| |||||| ||| ||||||||||||||||||    
T  31748376 acaaaagttgtaaaaaaatagttgtacaaatatcatttctca 31748335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 38919900 - 38919863
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  38919900 aaagttgtacaaaaatagttgtacaaatatcatttctc 38919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 43153083 - 43153120
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  43153083 aaagttgtacaaaaattgttgtacaaatatcatttctc 43153120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 9594530 - 9594478
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||| ||||| |||||||||||||||||    
T  9594530 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 9594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33393690 - 33393634
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||  |||||||||   ||||||||| |||||||||||||||||    
T  33393690 tgaaagagaaagttgttaaaaagttgtgagaaaatggttgtacaaatatcatttctc 33393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40584248 - 40584292
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||    
T  40584248 caaaagttgtaaaaaaatagttgtagaaatatcatttctcattaa 40584292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42225798 - 42225838
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  42225798 caaaagttgttacaaaatggttttacaaatatcatttctca 42225838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 27790258 - 27790315
Alignment:
Q  9 aaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaagaa 66  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27790258 aaggttgtataaaagttgtacaaaaatggttgtacaaatatcatttctcattaaagaa 27790315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 34792074 - 34792022
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  34792074 agagaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34792022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 16121200 - 16121161
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16121200 aaagttgtacaaaaatggttgtacaaatatcatttctcat 16121161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2165323 - 2165360
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2165323 aaagttgtacaaaaatggttgtacaaatatcatttctc 2165360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2176956 - 2176993
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2176956 aaagttgtacaaaaatggttgtacaaatatcatttctc 2176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 3339518 - 3339570
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||||||||| |||||||||||||||||    
T  3339518 agagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 3339570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 6997579 - 6997622
Alignment:
Q  15 gtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||| || ||||||||||||| ||||||||||||||||||    
T  6997579 gtacaaaaattatacaaaaatggttgtacaaatatcatttctca 6997622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 9395360 - 9395398
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  9395360 aaagttgtacaaaaatagttgtacaaatatcatttctca 9395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 10557447 - 10557409
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  10557447 aaaagttgtataaaaatggttgtacaaatatcatttctc 10557409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 25924883 - 25924937
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||||    
T  25924883 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcat 25924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 32135454 - 32135492
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  32135454 aaagttgtacaaaaatgattgtacaaatatcatttctca 32135492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 17442870 - 17442833
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  17442870 aaagttgtacaaaaatggttgtacaaatattatttctc 17442833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 19712395 - 19712354
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||| || || ||||||||||||||||||    
T  19712395 acaaaagttgtacaaaagtgattgtacaaatatcatttctca 19712354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 25567513 - 25567550
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  25567513 aaagttgtacaaaaatggttgtacgaatatcatttctc 25567550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 8778891 - 8778943
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  |||||||||  |||||||||| |||||||||||||||||    
T  8778891 agagaaagttgtcaaaaagttgttaaaaaatggttgtacaaatatcatttctc 8778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 19789095 - 19789147
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  19789095 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 19789147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 25811857 - 25811912
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||| |||||||||||| |||||||||| | ||||||||||||||||||    
T  25811857 agagaaagttgtcacaaaagttgta-aaaaatggttgttcaaatatcatttctcatt 25811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 28965859 - 28965911
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  28965859 agagaaagttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32729941 - 32729889
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| |||||||||   ||||||||| |||||||||||||||||    
T  32729941 agagaaagttgtataaaagttgtcagaaaatggttgtacaaatatcatttctc 32729889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 5852526 - 5852473
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5852526 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctca 5852473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 44897678 - 44897624
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  44897678 agagaaggttgtacgaaagttgtacaaaaatggttgtacaaatatcatttctcat 44897624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12208498 - 12208442
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||    
T  12208498 tgaaagagaaagttatacaaaagttgtacaaaaatggttgtacaaatatcatttctc 12208442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19637285 - 19637229
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  19637285 tgaaagagaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 19637229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19835878 - 19835822
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  19835878 tgaaagagaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 19835822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27529581 - 27529529
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  27529581 agagaaagttgtacaaaagttgtacaaaaatggttctacaaatatcatttctc 27529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 30340045 - 30339993
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  30340045 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 30339993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 34141494 - 34141442
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  34141494 agagaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34141442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 18749382 - 18749437
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  18749382 agagaaggttgtacaaaaattatacaaaaatggttgtacaaatatcatttctcatt 18749437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11728136 - 11728193
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||    
T  11728136 tgaaagagaaagttgtacaaaagttgtaccaaaatggttgtacaaacatcatttctca 11728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35203764 - 35203821
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  35203764 tgaaaaagaaagttgtacaaaagttgaacaaaaatggttgtacaaatatcatttctca 35203821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 12256953 - 12256901
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  12256953 agagaaggttgtacaaaagttatacaaaaatgattgtacaaatatcatttctc 12256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 26387878 - 26387930
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  26387878 agagaaggttgtacgaaagttgtacaagaatggttgtacaaatatcatttctc 26387930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 17999798 - 17999749
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  17999798 agagaaagttgtacaaaagttgtacacaaatggttgtacaaatatcattt 17999749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 25094404 - 25094351
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  25094404 agagaaagttgtacaaaaattgtaccaaaatggttatacaaatatcatttctca 25094351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 28679180 - 28679131
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  28679180 agagaatgttgtacaaaagttgtacaaaaatgattgtacaaatatcattt 28679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 38027634 - 38027683
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  38027634 agagaaggttgtacaaaagttgtacaaaaatgattgtacaagtatcattt 38027683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 40721823 - 40721771
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| ||||||| | |||||||||||||||||    
T  40721823 agagaaagttgtacaaaagttgtaccaaaatggctgtacaaatatcatttctc 40721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 27538939 - 27538978
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  27538939 aaagttgtacaaaaatggttgtacaaatatcatttctcat 27538978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 6328719 - 6328665
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| ||||||||||| || ||| ||||||||| |||||||||||||||||||    
T  6328719 agagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctcat 6328665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35705932 - 35705989
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| |||||| |||| || ||||||||||||| |||||||||||||||||||    
T  35705932 tgaaagagaaagttgtaaaaaa-ttatacaaaaatggttgtacaaatatcatttctcat 35705989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 11126507 - 11126462
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||    
T  11126507 ttgtacaaaagttatgcaaaaatggttgtacaaatatcatttctca 11126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 34373057 - 34373000
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    |||||| ||||||||||| || ||| ||||||||| |||||||||||||||| |||||    
T  34373057 agagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctaattaa 34373000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3839466 - 3839410
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||| ||| |||||||||| ||| ||||||||| |||||||||||||||||    
T  3839466 tgaaagtgaaagttatacaaaagttataccaaaatggttgtacaaatatcatttctc 3839410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11152718 - 11152770
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| || || ||||||| || |||||||||||||||||    
T  11152718 agagaaggttgtacaaaaattatataaaaatgattgtacaaatatcatttctc 11152770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 29168777 - 29168725
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||  |||||||||| |||||||||||||||||    
T  29168777 agagaaagttgtgcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 29168725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 33559693 - 33559637
Alignment:
Q  3 aaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||| ||||| ||||| || ||| ||||||||| |||||||||||||||||||    
T  33559693 aaagagaaagttgtccaaaaattatactaaaatggttgtacaaatatcatttctcat 33559637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 24727463 - 24727424
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  24727463 aaagttgtaccaaaatggttgtacaaatatcatttctcat 24727424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 11828843 - 11828877
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||||||||||||||||| ||||||||||||||    
T  11828843 aaagttgtacaaaaatggttgtacaaatatcattt 11828877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 45202155 - 45202193
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  45202155 aaagttgtaaaaaaatggttgtacaaatatcatttctca 45202193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 3366416 - 3366465
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    ||||||||||||||||||||||||  ||||| | | ||||||||||||||    
T  3366416 agagaaggttgtacaaaagttgtaataaaatagatgtacaaatatcattt 3366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 7498010 - 7498067
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    |||||| |||||  ||||||||||  ||||||||| ||||||||||||||||| ||||    
T  7498010 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctctttaa 7498067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 15123968 - 15124009
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  15123968 caaaagttgtcaaaaaatggttgtacaaatatcatttctcat 15124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 22296156 - 22296189
Alignment:
Q  24 ttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| |||||||||||||||||    
T  22296156 ttgtacaaaaatggttgtacaaatatcatttctc 22296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 36376868 - 36376921
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||  ||| ||||||||||| ||||| ||||||||||||||||||    
T  36376868 agagaaagttgtcaaaatgttgtacaaaagtggttgtacaaatatcatttctca 36376921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 43791821 - 43791870
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||||||||||||||||||||   ||||||| | ||||||||||||||    
T  43791821 agagaaggttgtacaaaagttgtcataaaatggatgtacaaatatcattt 43791870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 4723618 - 4723566
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| |||||||||  |||||||||| |||| ||||||||||||    
T  4723618 agagaaagttgtaaaaaagttgttaaaaaatggttgtacatatatcatttctc 4723566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 6666072 - 6666020
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| || ||| ||||||||||  ||||||||| |||||||||||||||||    
T  6666072 agagaaagtcgtaaaaaagttgtaataaaatggttgtacaaatatcatttctc 6666020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20247886 - 20247938
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||| |||| ||||| ||| ||||||||| |||||||    
T  20247886 agagaaagttgtacaaaagtcgtaccaaaatagttatacaaatattatttctc 20247938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 36909862 - 36909914
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||   ||||||||| |||||||||||||||||    
T  36909862 agagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 38598375 - 38598411
Alignment:
Q  23 gttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  38598375 gttgtacaaaaatggttatacaaatatcatttatcat 38598411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39147822 - 39147766
Alignment:
Q  1 tgaaagagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||||| ||||| |||||||||||| |||||| ||| ||||| ||||||||||    
T  39147822 tgaaagagaaagttgttacaaaagttgtaaaaaaatagttgtacaagtatcatttct 39147766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 40874293 - 40874333
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||  |||||||||| ||||||||||||||||||    
T  40874293 caaaagttgttaaaaaatggttgtacaaatatcatttctca 40874333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 42141613 - 42141665
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||  |||||||||| |||| ||||||||||||    
T  42141613 agagaaagttgtccaaaagttgtgaaaaaatggttgtacatatatcatttctc 42141665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 42554828 - 42554776
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| ||||||||||  ||| ||||| |||||||||||||||||    
T  42554828 agagaaagttgtaaaaaagttgtaataaagtggttgtacaaatatcatttctc 42554776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 44484675 - 44484727
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| ||||   ||||||||| |||||||||||||||||    
T  44484675 agagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctc 44484727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 48639402 - 48639454
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48639402 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 48639454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 47945035 - 47944981
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttt-tacaaatatcatttctca 58  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47945035 agagaaggttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctca 47944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 47950465 - 47950411
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttt-tacaaatatcatttctca 58  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47950465 agagaaggttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctca 47950411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 41538534 - 41538482
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  41538534 agagaaggttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 41538482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 41910204 - 41910252
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatt 53  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41910204 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatt 41910252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 27704485 - 27704435
Alignment:
Q  7 agaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  27704485 agaaggttgtacaaaagttgtacaaaaatagttgtacaaatatcatttctc 27704435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 45335914 - 45335860
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  45335914 agagaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttttcat 45335860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 2600560 - 2600607
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  2600560 gttgtacaaaagttgtactaaaatggttgtacaaatatcatttctcat 2600607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 11789717 - 11789763
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  11789717 gttgtacaaaagttgtactaaaatggttgtacaaatatcatttctca 11789763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 23034337 - 23034383
Alignment:
Q  10 aggttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23034337 aggttgtacaaaaattgtacaaaaatggttgtacaaatatcatttct 23034383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 40207830 - 40207876
Alignment:
Q  16 tacaaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  40207830 tacaaaagttgtacaaaaatagttgtacaaatatcatttctcattaa 40207876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 640444 - 640395
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  640444 agagaaagttgtacaaaaattgtacaaaaatggttgtacaaatatcattt 640395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 30538678 - 30538625
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  30538678 agagaaagttgtacaaaagttgtaccaaaattgttgtacaaatatcatttctca 30538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 11070280 - 11070228
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  11070280 agagaaagttgtacaaaagttatactaaaatggttgtacaaatatcatttctc 11070228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 27866560 - 27866600
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27866560 aaagttgtacaaaaatggttgtacaaatatcatttctcatt 27866600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 28548240 - 28548292
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| ||||| ||| |||||||||||||||||    
T  28548240 agagaaagttgtacaaaagttgtaccaaaatagttgtacaaatatcatttctc 28548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 35491438 - 35491482
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  35491438 ttgtacaaaagttgtacataaatggttatacaaatatcatttctc 35491482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 25272639 - 25272600
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  25272639 aaagttgtacaaaaatggttgtacaaatatcatttctcat 25272600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 33050235 - 33050180
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||||||||||||||   ||||||||| ||||||||||||||||||||    
T  33050235 agagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctcatt 33050180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 34349060 - 34349102
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  34349060 aaaagttgtacaaaaatggttgtacaaatatcatttcttatta 34349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 48522194 - 48522156
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  48522194 aaaagttgtacaaaaatggttgtacaaatatcatttctc 48522156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 37969983 - 37969930
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||||||||||||||  ||||| ||| ||||||||||||||||||    
T  37969983 agagaaagttgtacaaaagttgtatcaaaatagttgtacaaatatcatttctca 37969930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 41458919 - 41458972
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||| |||||| ||||||||| ||||||||| ||||||||    
T  41458919 agagaaagttgtacaaaaattgtactaaaatggttgtacaaatattatttctca 41458972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 5378679 - 5378627
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  |||||||||| |||||||||| |||||||||||||||||    
T  5378679 agagaaagttgtcaaaaagttgtataaaaatggttgtacaaatatcatttctc 5378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33341140 - 33341196
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||  ||||||||||||| ||| ||||| ||| |||||||||||||||||    
T  33341140 tgaaagagaaaattgtacaaaagttatactaaaattgttgtacaaatatcatttctc 33341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44511195 - 44511139
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||||||||||||||||   ||||||||| ||| |||||||||||||    
T  44511195 tgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctc 44511139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 17039209 - 17039158
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||| ||||||||||| || ||||||||| ||| ||||||||||||||||    
T  17039209 agagaaagttgtacaaaaattatacaaaaatagttgtacaaatatcatttct 17039158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 33465066 - 33465101
Alignment:
Q  24 ttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||| |||||||||||||||||||    
T  33465066 ttgtacaaaaatggttgtacaaatatcatttctcat 33465101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 37848643 - 37848682
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  37848643 aaagttgtacaaaaatgattgtacaaatatcatttctcat 37848682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 2347078 - 2347132
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| ||||||| ||||||||   ||||||||| |||||||||||||||||||    
T  2347078 agagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctcat 2347132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 7295489 - 7295448
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||| |||||| ||||||||| |||||||||||||||||||    
T  7295489 caaaaattgtactaaaatggttgtacaaatatcatttctcat 7295448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 24380744 - 24380781
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  24380744 aaagttgtataaaaatggttgtacaaatatcatttctc 24380781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25614836 - 25614893
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||| ||||| |||||||| |  |||||||| | ||||||||||||||||||    
T  25614836 tgaaagagaaagttgtgcaaaagttatcaaaaaatggatgtacaaatatcatttctca 25614893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 30864436 - 30864493
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    |||||| ||||||||||||||||   ||| ||||| ||||||||||||||||| ||||    
T  30864436 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctctttaa 30864493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 37385252 - 37385301
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| ||||||||||||||||  |||||| ||| ||||||||||||||    
T  37385252 agagaaagttgtacaaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 1709328 - 1709284
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||||||||||||| || |||| ||||||||||||    
T  1709328 ttgtacaaaaattgtacaaaaatgattgtacagatatcatttctc 1709284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 4971342 - 4971290
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| |||||||||   ||||||||| |||||||||||||||||    
T  4971342 agagaaagttgtataaaagttgtcacaaaatggttgtacaaatatcatttctc 4971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 52)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 14839064 - 14839116
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14839064 agagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 14839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 54233486 - 54233541
Alignment:
Q  4 aagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  54233486 aagagaaagttgtacaaaagttgtaaaaaaatggttgtacaaatatcatttctcat 54233541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 30664555 - 30664502
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||    
T  30664555 agagaaagttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctca 30664502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 2280229 - 2280177
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  2280229 agagaaagttgtacaaaagttgtactaaaatggttgtacaaatatcatttctc 2280177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9159051 - 9159107
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||    
T  9159051 tgaaagagaaaattgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 9159107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 29555857 - 29555909
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  29555857 agagaaggttgtacaaaagttatacaaaaatggttgtacaaatattatttctc 29555909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 44689837 - 44689793
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  44689837 gttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 44689793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 17118441 - 17118395
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  17118441 ttgtacaaaagttgtacaaaaatggttgtacaaatatcatttttcat 17118395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 42888799 - 42888843
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  42888799 ttgtacaaaagttgtacaaaaatggctgtacaaatatcatttctc 42888843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45517672 - 45517728
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| |||| ||| |||||||||| ||||||||||||| |||||||||||||||||    
T  45517672 tgaaaaagaaagttatacaaaagttatacaaaaatggttgtacaaatatcatttctc 45517728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 55264867 - 55264815
Alignment:
Q  7 agaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  55264867 agaagattgtataaaagttatacaaaaatggttgtacaaatatcatttctcat 55264815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52100317 - 52100258
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||| ||||||||||| || |  |||||||||| ||||||||||||||||||||    
T  52100317 tgaaagagaaagttgtacaaaaattattaaaaaatggttgtacaaatatcatttctcatt 52100258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 1402702 - 1402648
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||||||   ||||||| | |||||||||||||||||||    
T  1402702 agagaaggttgtacaaaagttgtcataaaatggatgtacaaatatcatttctcat 1402648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 9027658 - 9027608
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaa 62  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||| ||||    
T  9027658 gttgtacaaaagttgtataaaaatggttgtacaaataacatttctctttaa 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 11327160 - 11327106
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| ||||||||||||||||   ||||||||| |||||||||||||||||||    
T  11327160 agagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctcat 11327106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 16295516 - 16295462
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| |||||||||||||||||  ||| ||||| |||||||||||||||||||    
T  16295516 agagaaagttgtacaaaagttgtatcaaattggttgtacaaatatcatttctcat 16295462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 38471686 - 38471644
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttc 55  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  38471686 ttgtacaaaagttgtaccaaaatggttgtacaaatatcatttc 38471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 42643287 - 42643233
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| |||||||||||||||| | ||| ||||| |||||||||||||||||||    
T  42643287 agagaaagttgtacaaaagttgttccaaattggttgtacaaatatcatttctcat 42643233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 29057696 - 29057659
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29057696 aaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 29846914 - 29846951
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29846914 aaagttgtacaaaaatggttgtacaaatatcatttctc 29846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 38296689 - 38296734
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  38296689 ttgtacaaaagttgtactaaaatggttgtacaaatattatttctca 38296734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 47141619 - 47141672
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||| || ||| ||||||||| ||||||||||||||||||    
T  47141619 agagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctca 47141672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50280102 - 50280159
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||| ||||||||||||||||   | ||||||| ||||||||||||||||||    
T  50280102 tgaaagagaaagttgtacaaaagttgtcatagaatggttgtacaaatatcatttctca 50280159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7351665 - 7351709
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  7351665 ttgtacaaaaattatacaaaaatggttgtacaaatatcatttctc 7351709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 33971927 - 33971883
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||    
T  33971927 ttgtacaaaagttgtacaagaatggttgtataaatatcatttctc 33971883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 36301227 - 36301279
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||| |||||||    
T  36301227 agagaaagttgtacaaaagttgtacaaaaatgatcgtacaaatataatttctc 36301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 50025717 - 50025769
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| || ||| ||||||||| |||||||||||||||||    
T  50025717 agagaaagttgtacaaaatttataccaaaatggttgtacaaatatcatttctc 50025769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 19418176 - 19418231
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    ||||||||||||  |||||||||   ||||||||| ||||||||||||||||||||    
T  19418176 agagaaggttgtcaaaaagttgtcataaaatggttgtacaaatatcatttctcatt 19418231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 41877740 - 41877685
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| |||||  ||||||||||  ||||||||| ||||||||||||||||||||    
T  41877740 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcatt 41877685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 7949829 - 7949787
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    ||||||||||  ||||||||| |||||||||||||||||||||    
T  7949829 aaaagttgtagcaaaatggttgtacaaatatcatttctcatta 7949787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 14847548 - 14847590
Alignment:
Q  16 tacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||||| |||||||||  |||||||||||||||||    
T  14847548 tacaaaagttgtaccaaaatggttgcacaaatatcatttctca 14847590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 49361857 - 49361895
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| || |||||||||||||||||    
T  49361857 aaaagttgtacaaaaatgattgtacaaatatcatttctc 49361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 54134890 - 54134852
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  54134890 aaaagttgtaaaaaaatggttgtacaaatatcatttctc 54134852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 16479684 - 16479632
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  16479684 agagaaagttgtcacaaaagttgtacaaaa-tggttgtacaaatatcatttctc 16479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 25559756 - 25559703
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||| |||| || ||| ||||||||| ||||||||||||||||||    
T  25559756 agagaaagttgtataaaaattataccaaaatggttgtacaaatatcatttctca 25559703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 30669868 - 30669819
Alignment:
Q  313 agattagtcttcgttaatcgatgatgaaaatttcgtatcaatatcatgat 362  Q
    ||||||||| | ||||| || ||||| |||||||||||||||||||||||    
T  30669868 agattagtcgttgttaaacggtgatggaaatttcgtatcaatatcatgat 30669819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35368659 - 35368622
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  35368659 aaagttgtacaaaaatagttgtacaaatatcatttctc 35368622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39629857 - 39629906
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatt 53  Q
    |||||||||||| |||||||||||| |||||| ||| |||||||||||||    
T  39629857 agagaaggttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatt 39629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 48117384 - 48117347
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| || ||||||||||||||    
T  48117384 aaagttgtacaaaaatggttgtataaatatcatttctc 48117347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 48490536 - 48490573
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  48490536 aaagttgtacaaaagtggttgtacaaatatcatttctc 48490573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 48944737 - 48944782
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||    
T  48944737 ttgtacaaaagttgttagaaaatggttgtacaaatatcatttctca 48944782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 50745597 - 50745560
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50745597 aaagttgtacaaaaatgattgtacaaatatcatttctc 50745560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 3957881 - 3957830
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| ||||||||| |||||| |||| |||||||||||||||||    
T  3957881 agagaaagttgtataaaagttgt-caaaaaaggttgtacaaatatcatttctc 3957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 6178457 - 6178500
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  6178457 acaaaagttgt-caaaaatagttgtacaaatatcatttctcatta 6178500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 8254079 - 8254027
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||| ||||||||   ||||||||| |||||||||||||||||    
T  8254079 agagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 32931937 - 32931989
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||| ||||| |||||||||||||||||    
T  32931937 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 32931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36819008 - 36818956
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||| ||||| |||||||||||||||||    
T  36819008 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 36869856 - 36869908
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  |||||||||  |||||||||| |||||||||||||||||    
T  36869856 agagaaagttgtctaaaagttgtcaaaaaatggttgtacaaatatcatttctc 36869908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 43149366 - 43149406
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||||| ||| |||||||| |||||||||||    
T  43149366 aaagttgtacaaaaatagttgtacaaataacatttctcatt 43149406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 48205089 - 48205045
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| || |||||||||| || |||||||||||||||||    
T  48205089 ttgtacaaaaattatacaaaaatgattgtacaaatatcatttctc 48205045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 49761205 - 49761257
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| ||||   ||||||||| |||||||||||||||||    
T  49761205 agagaaagttgtacaaaaattgttagaaaatggttgtacaaatatcatttctc 49761257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 52963347 - 52963387
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||  |||||||||| |||||||||||||||||    
T  52963347 acaaaagttgttaaaaaatggttgtacaaatatcatttctc 52963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 12990488 - 12990543
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12990488 agagaaggttgtacgaaagttgtacaaaaatggttgtacaaatatcatttctcatt 12990543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 41564897 - 41564951
Alignment:
Q  3 aaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41564897 aaagaaaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 41564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 8577521 - 8577573
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  8577521 agagaaggttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 8577573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 5574278 - 5574329
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  5574278 agagaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6396383 - 6396325
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||    
T  6396383 tgaaagagaaagttgtacaaaagttgtaccaaaatggttgtaccaatatcatttctcat 6396325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 23400008 - 23400062
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||    
T  23400008 agagaagattgtacaaaagttgtataaaaatggttgtacaaatatcatttctcat 23400062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 1100269 - 1100217
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  1100269 agagaaagttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 1100217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 31244752 - 31244805
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| ||||||||||| ||||||||||||| || ||||||||||||||||||    
T  31244752 agagaatgttgtacaaaaattgtacaaaaatgattatacaaatatcatttctca 31244805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 40118742 - 40118795
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaagaa 66  Q
    |||||||||| || |||||||||| || ||||||||||||||||||||||||||    
T  40118742 ttgtacaaaaattatacaaaaatgattgtacaaatatcatttctcattaaagaa 40118795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 41425294 - 41425233
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaagaa 66  Q
    |||||| ||||||| |||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  41425294 agagaaagttgtacgaaagttgtaccaaaatagttgtacaaatatcatttctcataaaagaa 41425233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 22674764 - 22674712
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||||||||| ||| |||||||||||||||||    
T  22674764 agagaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 22674712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 26760607 - 26760559
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  26760607 gttgtacaaaaattgtacaaaaatggttgtacaaatatcaattctcatt 26760559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 16252782 - 16252821
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16252782 aaagttgtacaaaaatggttgtacaaatatcatttctcat 16252821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 50796054 - 50795999
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| |||||| ||||||||||||||| | ||| ||||||||||||||||||||    
T  50796054 agagaatgttgtataaaagttgtacaaaagtagttgtacaaatatcatttctcatt 50795999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 48390096 - 48390148
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  48390096 agagaagtttgtacaaaagttgtacaaaaatggttgtac-aatataatttctca 48390148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 578856 - 578804
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||    
T  578856 agagaaagttgtccaaaagttgtaccaaaatggttatacaaatatcctttctc 578804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11038318 - 11038262
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||||||||||| || ||| ||||||||| || ||||||||||||||    
T  11038318 tgaaagagaaagttgtacaaaaattataccaaaatggttgtataaatatcatttctc 11038262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12999841 - 12999893
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||||||||| |||||||||||||||||    
T  12999841 agagaaagttgtacaaaagttgttagaaaatggttgtacaaatatcatttctc 12999893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 21854483 - 21854535
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||| |||||  || |||||||||||||||||    
T  21854483 agagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctc 21854535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24158706 - 24158650
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||| || |||||| |||||||||||  |||||||| |||||||||||||||||    
T  24158706 tgaaagataaagttgtataaaagttgtaccgaaatggttgtacaaatatcatttctc 24158650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 28457373 - 28457421
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  28457373 gttgtataaaagttgtaccaaaatgattgtacaaatatcatttctcatt 28457421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 50460735 - 50460771
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||||||||||||||| ||||||||||||||||    
T  50460735 aaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11897226 - 11897183
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaata 48  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||    
T  11897226 agagaaagttgtacaaaagttgtaccaaaatggttgtacaaata 11897183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 35030785 - 35030828
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcattaaa 63  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||    
T  35030785 aaagttgtacaaaaatggttgtacaaataacatttctcaataaa 35030828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 49020435 - 49020478
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||  |||||||||| ||||||||||||||||||||    
T  49020435 acaaaagttgttaaaaaatggttgtacaaatatcatttctcatt 49020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 30414909 - 30414875
Alignment:
Q  23 gttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||| |||||||||||||||||    
T  30414909 gttgtacaaaaatggttgtacaaatatcatttctc 30414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 48336464 - 48336506
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  48336464 gttgtacaaaagttgtatcaaaatggttgtacaaatatcattt 48336506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 48962038 - 48962004
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggtt 39  Q
    ||||||||||||||||||||||||| |||||||||    
T  48962038 agagaaggttgtacaaaagttgtactaaaatggtt 48962004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 649821 - 649768
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| |||||||||||| |||||||||| | |||||||||||||||    
T  649821 agagaaagttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 49615296 - 49615346
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| ||||||   ||||||| |||||||||||||||||    
T  49615296 agagaaggttgtacaaaaattgtac--caatggttgtacaaatatcatttctc 49615346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 13813610 - 13813554
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    |||||| |||||||| |||||||   ||| ||||| |||||||||||||||||||||    
T  13813610 agagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctcatta 13813554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 15284210 - 15284163
Alignment:
Q  312 tagattagtcttcgttaatcgatgatgaaaatttcgtatcaatatcatg 360  Q
    |||||||||||||| ||| ||| |||||||| |||||||||||||||||    
T  15284210 tagattagtcttcgctaaacgacgatgaaaa-ttcgtatcaatatcatg 15284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 17167901 - 17167849
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| |||||||||   ||||||| | |||||||||||||||||    
T  17167901 agagaaggttgtataaaagttgtcataaaatggatgtacaaatatcatttctc 17167849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 25098807 - 25098863
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatta 61  Q
    ||||||||||||  |||||||||   ||| ||||| |||||||||||||||||||||    
T  25098807 agagaaggttgtctaaaagttgttacaaagtggttgtacaaatatcatttctcatta 25098863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 26910484 - 26910432
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| || ||| ||||||||| | ||||||||| |||||||||||||||||    
T  26910484 agagaaagtggtagaaaagttgtgccaaaatggttgtacaaatatcatttctc 26910432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27787541 - 27787489
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| || ||||||||||||||| ||| ||||| || ||||||||||||||    
T  27787541 agagaaagtcgtacaaaagttgtaccaaattggttgtataaatatcatttctc 27787489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27954281 - 27954241
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||| || || ||||||||||||||||    
T  27954281 aaaagttgtacaaaaatgattgtataaatatcatttctcat 27954241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 35972823 - 35972875
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   |||||||||  ||||||||||||||||    
T  35972823 agagaaagttgtacaaaagttgtcacaaaatggttgaacaaatatcatttctc 35972875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 37685383 - 37685328
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||| |||||||||||| |||||||||| | ||||||||||||||||||    
T  37685383 agagaaagttgtcacaaaagttgta-aaaaatggttgttcaaatatcatttctcatt 37685328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 37700135 - 37700190
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||| ||||| |||||||||||| |||||||||| | ||||||||||||||||||    
T  37700135 agagaaagttgtcacaaaagttgta-aaaaatggttgttcaaatatcatttctcatt 37700190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 39815398 - 39815346
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| |||||||||||  ||||||||| ||||||||| |||||||    
T  39815398 agagaaagttgtccaaaagttgtagcaaaatggttgtacaaatataatttctc 39815346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 42256512 - 42256460
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||| ||||||||   ||||||||| |||||||||||||||||    
T  42256512 agagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 47059913 - 47059953
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  47059913 aaagttgttaaaaaatggttgtacaaatatcatttctcatt 47059953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 49446843 - 49446875
Alignment:
Q  31 aaaatggttttacaaatatcatttctcattaaa 63  Q
    ||||||||||||||||||||||||||| |||||    
T  49446843 aaaatggttttacaaatatcatttctctttaaa 49446875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 49645418 - 49645362
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||  |||||||||||||||   |||||| || |||||||||||||||||    
T  49645418 tgaaagagaaaattgtacaaaagttgtcataaaatgattatacaaatatcatttctc 49645362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 145113 - 145061
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  145113 agagaatgttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 145061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 1864 - 1918
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||    
T  1864 agagaagattgtacaaaagttatacaaaaatggttgtacaaatatcatttctcat 1918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 23133555 - 23133608
Alignment:
Q  4 aagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23133555 aagataaggttgtacaaaagttgtacaaaaatggttgtacaaatataatttctc 23133608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29863607 - 29863551
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  29863607 tgaaagagaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 29863551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36110186 - 36110134
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  36110186 agagaaggttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 36110134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 50291334 - 50291282
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  50291334 agagaaggttgtataaaagttgtacaaaaatgattgtacaaatatcatttctc 50291282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 38960679 - 38960730
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  38960679 agagaaggttgtataaaaattgtacaaaaatggttgtacaaatatcatttct 38960730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 43307395 - 43307438
Alignment:
Q  12 gttgtacaaaagttgtacaaaaatggttttacaaatatcatttc 55  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  43307395 gttgtacaaaagttgtacaaaaatggttgtacaaatatcatttc 43307438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 4878019 - 4877966
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggtt-ttacaaatatcatttctc 57  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  4878019 agagaaggttgtacaaaagttgtacaaaaatggttgtaaaaaatatcatttctc 4877966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 1987732 - 1987784
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  1987732 agagaaagttgtacaaaaattgtactaaaatggttgtacaaatatcatttctc 1987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 4577609 - 4577557
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  4577609 agagaaagttgtacaaaaattgtacgaaaatggttgtacaaatatcatttctc 4577557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 24310544 - 24310584
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  24310544 aaagttgtacaaaaatggttgtacaaatatcatttctcatt 24310584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 31318805 - 31318753
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  31318805 agagaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 31318753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 45418119 - 45418067
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| ||||||||||| ||||||||| |||||||||||||||||    
T  45418119 agagaaagttgtagaaaagttgtaccaaaatggttatacaaatatcatttctc 45418067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 46355312 - 46355364
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||| ||||||||||||||| ||||| |||||||||||||||||    
T  46355312 agagaatgttgtataaaagttgtacaaaagtggttgtacaaatatcatttctc 46355364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 7795062 - 7795023
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  7795062 aaagttgtacaaaaatggttgtacaaatatcatttctcat 7795023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 26442410 - 26442461
Alignment:
Q  6 gagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| ||||| |||||||||||| ||||||||| |||||||||||||||||    
T  26442410 gagaaagttgtgcaaaagttgtaccaaaatggttgtacaaatatcatttctc 26442461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 55960744 - 55960697
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  55960744 ttgtacaaaagttataccaaaatggttatacaaatatcatttctcatt 55960697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 3475921 - 3475867
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||| ||||||||||||||||   ||||||||| |||||||||||||||||||    
T  3475921 agagaaagttgtacaaaagttgtcataaaatggttgtacaaatatcatttctcat 3475867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 29577457 - 29577507
Alignment:
Q  7 agaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||| ||||||||||| |||||||||||| ||| |||||||||||||||||    
T  29577457 agaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 29577507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1868916 - 1868953
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1868916 aaagttgtacaaaaatggttgtacaaatatcatttctc 1868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 6093626 - 6093678
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||  ||||||||| |||||||||||||||||    
T  6093626 agagaaagttgtacaaaaattgtattaaaatggttctacaaatatcatttctc 6093678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22893924 - 22893869
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||| |||| ||||||||||||| || |||||||||||||||||    
T  22893924 tgaaagagaaagttgtaaaaaa-ttgtacaaaaatgattgtacaaatatcatttctc 22893869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22945592 - 22945537
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| |||||| |||| ||||||||||||| || |||||||||||||||||    
T  22945592 tgaaagagaaagttgtaaaaaa-ttgtacaaaaatgattgtacaaatatcatttctc 22945537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33914369 - 33914409
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  33914369 caaaagttgtaccaaaatggttatacaaatatcatttctca 33914409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35037653 - 35037609
Alignment:
Q  13 ttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||    
T  35037653 ttgtacaaaagttgtatcaaaatggttgtacaaatatcatttctc 35037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 36871191 - 36871231
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctcatt 60  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  36871191 aaagttgtacaaaaatagttgtacaaatatcatttctcatt 36871231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 45521598 - 45521650
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||||||   ||||||| | |||||||||||||||||    
T  45521598 agagaaggttgtacaaaagttgtcataaaatggatgtacaaatatcatttctc 45521650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 48650275 - 48650327
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||||||||||| ||||||||| ||| |||||||| ||||||||    
T  48650275 agagaaagttgtacaaaagttttacaaaaatagttgtacaaataacatttctc 48650327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5622514 - 5622456
Alignment:
Q  1 tgaaagagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| ||||| |||||||||||| |||||||||| | |||||||||||||||||    
T  5622514 tgaaagagaaagttgtcacaaaagttgta-aaaaatggttgttcaaatatcatttctcat 5622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 43511679 - 43511718
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  43511679 caaaagttgtacaaaaatagttgtacaaatatcatttctc 43511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 35824127 - 35824177
Alignment:
Q  7 agaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| |||| ||||||||||  |||||||||| |||||||||||||||||    
T  35824127 agaagattgtccaaaagttgttaaaaaatggttgtacaaatatcatttctc 35824177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 36081851 - 36081793
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaa 63  Q
    |||||| ||||| |||||||||||  ||||||| | ||| |||||||||||||||||||    
T  36081851 agagaaagttgtccaaaagttgtagcaaaatggctatacgaatatcatttctcattaaa 36081793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9828006 - 9828043
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  9828006 aaagttgtactaaaatggttgtacaaatatcatttctc 9828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 14090069 - 14090122
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||  |||||||||||||||||||||  | |||||||||||||||    
T  14090069 agagaaagttgtttaaaagttgtacaaaaatggttggataaatatcatttctca 14090122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 31413809 - 31413846
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  31413809 aaagttgtacaaaaatagttgtacaaatatcatttctc 31413846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 41170824 - 41170776
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  41170824 agagaaagttgt-caaaagttgtaccaaaatggttgtacaaatatcattt 41170776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46282660 - 46282619
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||| || |||||||||||| ||||||||||||||||    
T  46282660 acaaaagttttaaaaaaatggtttttcaaatatcatttctca 46282619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 51224857 - 51224910
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||  ||||||||||  ||||||||| ||||||||||||||||||    
T  51224857 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctca 51224910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 54848183 - 54848150
Alignment:
Q  23 gttgtacaaaaatggttttacaaatatcatttct 56  Q
    ||||||||||||||||| ||||||||||||||||    
T  54848183 gttgtacaaaaatggttgtacaaatatcatttct 54848150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 55609184 - 55609236
Alignment:
Q  5 agagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  55609184 agagaaagttgtcacaaaagttgtacaaaa-tggttgtacaaatatcatttctc 55609236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1015119 - 1015159
Alignment:
Q  17 acaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  1015119 acaaaggttgtacaaaattggttgtacaaatatcatttctc 1015159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4949267 - 4949307
Alignment:
Q  19 aaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  4949267 aaaagttgtaccaaaatagttgtacaaatatcatttctcat 4949307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 5208346 - 5208398
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||||||||   ||| ||||| |||||||||||||||||    
T  5208346 agagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 5208398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 6256481 - 6256521
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  6256481 caaaagttgtacaaaaatgattgtacaaatattatttctca 6256521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8810610 - 8810570
Alignment:
Q  18 caaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||||||||  ||||||||| ||||||||||||||||||    
T  8810610 caaaagttgtaagaaaatggttgtacaaatatcatttctca 8810570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15638213 - 15638161
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||||||||  ||||||| || |||||||||||||||||    
T  15638213 agagaaagttgtgcaaaagttgtcaaaaaatgattgtacaaatatcatttctc 15638161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 18944331 - 18944303
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaa 33  Q
    |||||||||||||||||||||||||||||    
T  18944331 agagaaggttgtacaaaagttgtacaaaa 18944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 29513715 - 29513767
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  29513715 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 29513767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37775442 - 37775494
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatt 53  Q
    |||||||||| |||||||||||||||||  ||||| ||| || ||||||||||    
T  37775442 tgaaagagaaagttgtacaaaagttgtaataaaatagttgtagaaatatcatt 37775494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 51107460 - 51107512
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||| ||||| || |||||||||| || |||||||||||||||||    
T  51107460 agagaaagttgtgcaaaaattatacaaaaatgattgtacaaatatcatttctc 51107512  T

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Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 53781852 - 53781907
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||||||  ||||| ||||||||||| ||||| ||| |||||||||||||||||    
T  53781852 tgaaagagaaaattgtataaaagttgtac-aaaatagttgtacaaatatcatttctc 53781907  T

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Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 54803347 - 54803399
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| ||| || ||||| ||| |||||||||||||||||    
T  54803347 agagaaagttgtacaaaaattgcaccaaaatagttgtacaaatatcatttctc 54803399  T

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Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 56025308 - 56025256
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  56025308 agagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctc 56025256  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 48706 - 48657
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcattt 54  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  48706 agagaaggttgtacaaaaattgtacaaaaatgattgtacaaatatcattt 48657  T

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Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 60525 - 60469
Alignment:
Q  1 tgaaagagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    ||||||| || |||||  ||||||||||  ||||||||| |||||||||||||||||    
T  60525 tgaaagaaaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 60469  T

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Target: scaffold0651 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 4865 - 4917
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  4865 agagaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 4917  T

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Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 17027 - 16969
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaa 63  Q
    |||||| |||||  ||||||||||  ||||||||| |||||||||||||||||||||||    
T  17027 agagaaagttgtcaaaaagttgtagtaaaatggttgtacaaatatcatttctcattaaa 16969  T

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Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 17086 - 17049
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17086 aaagttgtacaaaaatggttgtacaaatatcatttctc 17049  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9833 - 9774
Alignment:
Q  1 tgaaagagaaggttgt-acaaaagttgtacaaaaatggttttacaaatatcatttctcat 59  Q
    |||||||||| ||||| |||||| || || |||||||||| |||||||||||||||||||    
T  9833 tgaaagagaaagttgtcacaaaaattataaaaaaatggttgtacaaatatcatttctcat 9774  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 155958 - 155905
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctca 58  Q
    |||||| |||||  ||||||||||  ||||||||| ||||||||||||||||||    
T  155958 agagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctca 155905  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 11195 - 11159
Alignment:
Q  20 aaagttgtacaaaaatggttttacaaatatcatttct 56  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  11195 aaagttgttcaaaaatggttgtacaaatatcatttct 11159  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 204464 - 204516
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||||||||||||||||||||   ||||| | | |||||||||||||||||    
T  204464 agagaaggttgtacaaaagttgtcagaaaatagatgtacaaatatcatttctc 204516  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 18647 - 18587
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctcattaaaga 65  Q
    |||||| |||||||||||||| |   ||| ||||| |||||||||||||||||| ||||||    
T  18647 agagaaagttgtacaaaagttatcacaaattggttgtacaaatatcatttctcaataaaga 18587  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 5089 - 5141
Alignment:
Q  5 agagaaggttgtacaaaagttgtacaaaaatggttttacaaatatcatttctc 57  Q
    |||||| ||||||||||| || || |||||||||| || ||||||||||||||    
T  5089 agagaaagttgtacaaaaattctataaaaatggttatataaatatcatttctc 5141  T

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