View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_low_13 (Length: 332)

Name: NF4127_low_13
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_low_13
NF4127_low_13
[»] scaffold0043 (5 HSPs)
scaffold0043 (11-320)||(30121-30430)
scaffold0043 (11-320)||(44979-45288)
scaffold0043 (103-265)||(52790-52951)
scaffold0043 (11-58)||(51593-51640)
scaffold0043 (271-308)||(53058-53095)
[»] chr3 (10 HSPs)
chr3 (94-268)||(27389956-27390127)
chr3 (103-270)||(27378467-27378633)
chr3 (94-245)||(19484212-19484361)
chr3 (68-181)||(19474842-19474955)
chr3 (121-268)||(27349131-27349275)
chr3 (200-268)||(19484364-19484432)
chr3 (11-55)||(19483159-19483203)
chr3 (271-308)||(19474758-19474795)
chr3 (142-179)||(26629637-26629674)
chr3 (271-308)||(27348994-27349031)
[»] scaffold1142 (1 HSPs)
scaffold1142 (69-270)||(363-561)
[»] chr2 (3 HSPs)
chr2 (130-265)||(22393445-22393577)
chr2 (271-308)||(22393301-22393338)
chr2 (11-55)||(22394862-22394906)


Alignment Details
Target: scaffold0043 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 30430 - 30121
Alignment:
Q  11 catcaccatcttcctagcaattgaaattaatatacaaatgatatcttaaatgtgtaaattcatgacaacctcgtcgtttagaaaaactgaacaacatgtg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30430 catcaccatcttcctagcaattgaaattaatatacaaatgatatcttaaatgtgtaaattcatgacaacctcgtcgtttagagaaactgaacaacatgtg 30331  T
Q  111 taaattcaaaatcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggagttgtttcatg 210  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30330 taaattcaaaatcaaaaggatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtctgagttgtttcatg 30231  T
Q  211 agagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaatgtcttggtcattttttgttcctgacgtagaaacctcttgca 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30230 agagtctccaagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaatgtcttggtcattttttgttcctgacgtagaaccctcttgca 30131  T
Q  311 gcatatatct 320  Q
    ||||||||||    
T  30130 gcatatatct 30121  T

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Target: scaffold0043; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 45288 - 44979
Alignment:
Q  11 catcaccatcttcctagcaattgaaattaatatacaaatgatatcttaaatgtgtaaattcatgacaacctcgtcgtttagaaaaactgaacaacatgtg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45288 catcaccatcttcctagcaattgaaattaatatacaaatgatatcttaaatgtgtaaattcatgacaacctcgtcgtttagagaaactgaacaacatgtg 45189  T
Q  111 taaattcaaaatcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggagttgtttcatg 210  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45188 taaattcaaaatcaaaaggatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtctgagttgtttcatg 45089  T
Q  211 agagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaatgtcttggtcattttttgttcctgacgtagaaacctcttgca 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45088 agagtctccaagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaatgtcttggtcattttttgttcctgacgtagaaccctcttgca 44989  T
Q  311 gcatatatct 320  Q
    ||||||||||    
T  44988 gcatatatct 44979  T

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Target: scaffold0043; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 52790 - 52951
Alignment:
Q  103 aacatgtgtaaattcaaaat--caaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggag 200  Q
    |||||||||||| ||| |||  |||||  ||||||||||| |||||||||| ||| ||||||||||||||||||||||||   |||  | |||||| |||    
T  52790 aacatgtgtaaaatcataatatcaaaaggatgatgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttg---attgatattagtctgag 52886  T
Q  201 ttgtttcatgagagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatga 265  Q
     |||||| |||||| |  ||  ||||| |||||||| |||| || ||| |||||||| |||||||    
T  52887 atgtttcctgagaggcaacattatcaatatcttcaatacttaacctgacactctgcacaaaatga 52951  T

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Target: scaffold0043; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 51593 - 51640
Alignment:
Q  11 catcaccatcttcctagcaattgaaattaatatacaaatgatatctta 58  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||||||    
T  51593 catcacaaacttcctagcaattgaaattaataaacaaattatatctta 51640  T

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Target: scaffold0043; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 53058 - 53095
Alignment:
Q  271 tcttggtcattttttgttcctgacgtagaaacctcttg 308  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  53058 tcttggtcattctttgttcctgacgtagaaccctcttg 53095  T

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Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 94 - 268
Target Start/End: Original strand, 27389956 - 27390127
Alignment:
Q  94 aaactgaacaacatgtgtaaattcaaaatcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattattttta 193  Q
    |||||||||||||| || || |||||||||||||   ||| ||||||| |||||||||||| |||||| ||||| || |||||||||| |||||||   |    
T  27389956 aaactgaacaacatatgaaagttcaaaatcaaaagggtgacgaggtagtataagaaaacaatgttgattcaaaatgtattcaccttgattattatt---a 27390052  T
Q  194 gtcggagttgtttcatgagagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaa 268  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27390053 gtctgagttgtttcatgagagtctccaagatcaacatcttcaaaacttgactggatactctgcataaaatgaaaa 27390127  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 270
Target Start/End: Complemental strand, 27378633 - 27378467
Alignment:
Q  103 aacatgtgtaaattcaaaat--caaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggag 200  Q
    |||||||||||| ||| |||  |||||  ||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||||   | || |||    
T  27378633 aacatgtgtaaaatcataatatcaaaaggatgatgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatt---aatctgag 27378537  T
Q  201 ttgtttcatgagagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaatg 270  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||| |||||||    
T  27378536 ttggttcatgagagtcaccaagatcaacatcttcaaaacttgacttgatcctctaaataaaaggaaaatg 27378467  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 19484212 - 19484361
Alignment:
Q  94 aaactgaacaacatgtgtaaattcaaaatcaaaacaatgatgaggtagcataagaaaa-caaagttgatccaaaaagtcttcaccttgactattattttt 192  Q
    |||||||||||||| || ||||||||||||||||   |||||  |||||||||||||| ||| |||||||||||| || |||||||||| |||||||       
T  19484212 aaactgaacaacatatgaaaattcaaaatcaaaagggtgatggtgtagcataagaaaaacaatgttgatccaaaatgtattcaccttgattattatt--- 19484308  T
Q  193 agtcggagttgtttcatgagagtctccaagatcaacatcttcaaaacttgact 245  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  19484309 agtctgagttgtttcatgagagtcttcaagatcaacatcttcaaaatttgact 19484361  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 19474955 - 19474842
Alignment:
Q  68 attcatgacaacctcgtcgtttagaaaaactgaacaacatgtgtaaattcaaaatcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaa 167  Q
    |||||||||| | | ||| |||||| ||||||||||||||||||||||||||||||||||   ||||||| |||||||| ||||||||||||||| ||||    
T  19474955 attcatgacagcattgtcatttagagaaactgaacaacatgtgtaaattcaaaatcaaaagggtgatgagatagcataaaaaaacaaagttgatcaaaaa 19474856  T
Q  168 agtcttcaccttga 181  Q
    | || |||||||||    
T  19474855 attcatcaccttga 19474842  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 268
Target Start/End: Complemental strand, 27349275 - 27349131
Alignment:
Q  121 atcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggagttgtttcatgagagtctcca 220  Q
    |||||||  ||||||||||| |||||||||| ||| ||||||||||||||||||||||||   ||| || ||| || |||||||||| |||||| || ||    
T  27349275 atcaaaaggatgatgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttg---attgttattaatctgagttgtttcctgagaggctaca 27349179  T
Q  221 agatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaa 268  Q
      ||||| |||||||| |||| || ||| |||||||| ||||||||||    
T  27349178 ttatcaatatcttcaatacttaacctgacactctgcacaaaatgaaaa 27349131  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 19484364 - 19484432
Alignment:
Q  200 gttgtttcatgagagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaa 268  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  19484364 gttgtttcctgggagtctccaagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaa 19484432  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 19483159 - 19483203
Alignment:
Q  11 catcaccatcttcctagcaattgaaattaatatacaaatgatatc 55  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||    
T  19483159 catcaccaacttcctagcaattgaaattaataaacaaatgatatc 19483203  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 19474795 - 19474758
Alignment:
Q  271 tcttggtcattttttgttcctgacgtagaaacctcttg 308  Q
    |||||||||||||||||||||||||||||| |||||||    
T  19474795 tcttggtcattttttgttcctgacgtagaaccctcttg 19474758  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 26629674 - 26629637
Alignment:
Q  142 cataagaaaacaaagttgatccaaaaagtcttcacctt 179  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  26629674 cataagaaaataaaattgatccaaaaagtcttcacctt 26629637  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 27349031 - 27348994
Alignment:
Q  271 tcttggtcattttttgttcctgacgtagaaacctcttg 308  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  27349031 tcttggtcattctttgttcctgacgtagaaccctcttg 27348994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 270
Target Start/End: Complemental strand, 561 - 363
Alignment:
Q  69 ttcatgacaacctcgtcgtttagaaaaactgaacaacatgtgtaaattcaaaatcaaaacaatgatgaggtagcataagaaaacaaagttgatccaaaaa 168  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||||||||| |||||||   ||| |||||| ||| || || | ||| || |||||||||    
T  561 ttcatgacaacatcgtcatttagaggaactgaacaacatgtgtaaattcagaatcaaatagatgttgaggtggcaaaataagagaaaattaatccaaaaa 462  T
Q  169 gtcttcaccttgactattatttttagtcggagttgtttcatgagagtctccaagatcaacatcttcaaaacttgacttgatactctgcataaaatgaaaa 268  Q
    ||||||||||||   |||||| ||| || |||||  |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||    
T  461 gtcttcaccttg---attattattaatctgagttcgttcatgagagtcgccaagatcaacatcttcaaaacttgacttgatcatctgcataaaatggaaa 365  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 265
Target Start/End: Complemental strand, 22393577 - 22393445
Alignment:
Q  130 atgatgaggtagcataagaaaacaaagttgatccaaaaagtcttcaccttgactattatttttagtcggagttgtttcatgagagtctccaagatcaaca 229  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||   |||  | |||||| ||| |||||| |||||| |  ||  ||||| |    
T  22393577 atgatgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttg---attgatattagtctgagatgtttcctgagaggcaacattatcaata 22393481  T
Q  230 tcttcaaaacttgacttgatactctgcataaaatga 265  Q
    ||||||| |||| || ||| |||||||| |||||||    
T  22393480 tcttcaatacttaacctgacactctgcacaaaatga 22393445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 22393338 - 22393301
Alignment:
Q  271 tcttggtcattttttgttcctgacgtagaaacctcttg 308  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  22393338 tcttggtcattctttgttcctgacgtagaaccctcttg 22393301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 22394906 - 22394862
Alignment:
Q  11 catcaccatcttcctagcaattgaaattaatatacaaatgatatc 55  Q
    ||||| || ||||||||||||||||||||||| |||||| |||||    
T  22394906 catcaacaacttcctagcaattgaaattaataaacaaattatatc 22394862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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