View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_14 (Length: 332)
Name: NF4127_low_14
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 34925054 - 34925370
Alignment:
| Q |
1 |
attgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaagttatataggaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925054 |
attgcacaatacgaatactttattgatgaatataattctggagaatgattcaaaaccagaagtttaaacatagacaaattgcagaagttatataggaaat |
34925153 |
T |
|
| Q |
101 |
agtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925154 |
agtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacata |
34925253 |
T |
|
| Q |
201 |
gtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaatattctttataagaagtctaacatataaattttggatgtccttc |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925254 |
gtttaattttagttacagcatttagaatgatttatgtaagcacctactcctataaatattctttataagaagtctaacatataaattttggatgtccttc |
34925353 |
T |
|
| Q |
301 |
atcttaagcctccaaca |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34925354 |
atcttaagcctccaaca |
34925370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 34934959 - 34935272
Alignment:
| Q |
1 |
attgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaagttatataggaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||| || ||||||||||||||||| ||| |||||||| || |
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| T |
34934959 |
attgcacaatacgaatactttattgatgaatataattctggataataattcaaaaccagaatactacacatagacaaattgcagtagtcatataggagat |
34935058 |
T |
|
| Q |
101 |
agtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| | |||||||||| ||| |
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| T |
34935059 |
agtacagaataacaagacacacatagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaactttaggataaaacta---ata |
34935155 |
T |
|
| Q |
201 |
gtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaatattctttataagaagtctaacatataaattttggatgtccttc |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
34935156 |
gtttaattttagtcacagcattgagaatgatttatttaagcacctactcctataaatattctatataagaagtctaacatatagattttggatgtccttc |
34935255 |
T |
|
| Q |
301 |
atcttaagcctccaaca |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34935256 |
atcttaagcctccaaca |
34935272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 34929421 - 34929729
Alignment:
| Q |
1 |
attgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaagttatataggaaat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| ||| |||| ||||| || ||||||||||||||||| ||| ||||||||||| |
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|
| T |
34929421 |
attgcacaatacgaatacttt--tgatgacaataattctggagaataattcaaaaccagaatactacacatagacaaattgcagtagtcatataggaaat |
34929518 |
T |
|
| Q |
101 |
agtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatgataaaactaaacata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| | |||||||||| ||| |
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|
| T |
34929519 |
agtacagaataacaagacacacatagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaactttaggataaaacta---ata |
34929615 |
T |
|
| Q |
201 |
gtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaatattctttataagaagtctaacatataaattttggatgtccttc |
300 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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|
| T |
34929616 |
gtttaattttagtcacagaattgagaatgatttatttaagcacctactcctataaatattctatataagaagtcaaacatatagattttggatgtccttc |
34929715 |
T |
|
| Q |
301 |
atcttaagcctcca |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34929716 |
atcttaagcctcca |
34929729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 32683670 - 32683559
Alignment:
| Q |
86 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
185 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32683670 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32683577 |
T |
|
| Q |
186 |
ataaaactaaacatagtt |
203 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
32683576 |
ataaaacagaacatagtt |
32683559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 32685380 - 32685269
Alignment:
| Q |
86 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
185 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32685380 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32685287 |
T |
|
| Q |
186 |
ataaaactaaacatagtt |
203 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
32685286 |
ataaaacagaacatagtt |
32685269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 28699374 - 28699345
Alignment:
| Q |
89 |
tatataggaaatagtacagaataacaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28699374 |
tatataggaaatagtacagaataacaagac |
28699345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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