View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_17 (Length: 290)
Name: NF4127_low_17
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5037984 - 5037714
Alignment:
| Q |
1 |
aaatcaactggtaacctttacgaatcttcttatttgactccctcccataccaagcttataataacctctttgttgtatcttcccccaaaaacggcacata |
100 |
Q |
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| T |
5037984 |
aaatcaaccagtaacctttacgaatcttcttattcgactcccccccataccaagcttataataacctctttgttgtatcttcccccaaaaacggcacata |
5037885 |
T |
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| Q |
101 |
tatttcaaatagtccaagattgtttataaatgaaaac-ttaccatgaccgaaagttacatgagatatattggtcttcagaggcatttaaattgtcatcta |
199 |
Q |
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| T |
5037884 |
tatttcaaatagtccaagattgtttataaatgaaaactttaccatgaccaaaagttacatgagatatattggtcttcagaggcatttaaattgtcatcta |
5037785 |
T |
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| Q |
200 |
taaccgcgattatgtccgcaaaatgaaggtttttgtctctggggcttttgtggcatcttgtgatcttatat |
270 |
Q |
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| T |
5037784 |
taaccacgattgtgtccgcaaagtaaaggtttttgtctctggggcttttgtggcatcttgtgatcttatat |
5037714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 64 - 270
Target Start/End: Complemental strand, 5032728 - 5032519
Alignment:
| Q |
64 |
acctctttgttgtatcttcccccaaaaacggcacatatatttcaaatagtccaagattgtttataaatgaaaac-ttaccatgaccgaaagttacatgag |
162 |
Q |
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||||| |||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || |||||| | |||||||||| || |
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| T |
5032728 |
acctcgttgttgtatcttcccccacaaacggcgcatatatttcatatagttcaagactgtttataaatgaaaaccttgccatgatcaaaagttacataag |
5032629 |
T |
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| Q |
163 |
at--atattggtcttcagaggcatttaaattgtcatctataaccgcgattatgtccgcaaaatgaaggtttttgtctctggggcttttgtggcatcttgt |
260 |
Q |
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| T |
5032628 |
atgtatattggtctgcagaagcttttaaattgtggtctataaccgtgattgtggccgcaaaatcaaggttttcgccactggggcttttgtggcatcttgt |
5032529 |
T |
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| Q |
261 |
gatcttatat |
270 |
Q |
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| T |
5032528 |
gatctcatat |
5032519 |
T |
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