View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_low_19 (Length: 283)

Name: NF4127_low_19
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_low_19
NF4127_low_19
[»] chr4 (7 HSPs)
chr4 (16-273)||(7225123-7225379)
chr4 (16-181)||(8186321-8186486)
chr4 (18-187)||(21833241-21833410)
chr4 (57-115)||(1755548-1755606)
chr4 (75-188)||(1547724-1547837)
chr4 (75-184)||(571256-571365)
chr4 (139-184)||(641933-641978)
[»] chr8 (5 HSPs)
chr8 (75-184)||(32151894-32152003)
chr8 (72-188)||(18314656-18314772)
chr8 (78-184)||(17635680-17635786)
chr8 (143-188)||(17643024-17643069)
chr8 (76-109)||(18318665-18318698)
[»] chr1 (2 HSPs)
chr1 (73-184)||(19467450-19467561)
chr1 (75-184)||(7555124-7555233)
[»] chr6 (2 HSPs)
chr6 (56-102)||(6395545-6395591)
chr6 (139-184)||(7993631-7993676)
[»] chr7 (3 HSPs)
chr7 (75-184)||(7977799-7977908)
chr7 (72-116)||(10169068-10169112)
chr7 (72-116)||(10176593-10176637)
[»] chr3 (1 HSPs)
chr3 (56-163)||(1657474-1657581)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 7225123 - 7225379
Alignment:
Q  16 catcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttgacctcgctcacatgttccaacat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  7225123 catcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttgacctctctcacatgttcca-cat 7225221  T
Q  116 tttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaagaactcgaccttagtcaaagtggaaggttgacaaacattgtt 215  Q
    || |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7225222 ttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgaccttagtcaacgtggaaggttgacaaacattgtt 7225321  T
Q  216 ggtggagtagaggctctttcatcagcacttttaaaactccgtagggttaatctctctg 273  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7225322 ggtggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctctg 7225379  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 8186321 - 8186486
Alignment:
Q  16 catcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttgacctcgctcacatgttccaacat 115  Q
    ||||||| ||| |||| || ||| ||| |||||| |||  ||| |||| || ||| || | ||||||||||||||||||||| |||||||||||||||||    
T  8186321 catcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacat 8186420  T
Q  116 tttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaagaactcga 181  Q
    |   ||| ||| |||||||||||| |||||||||||| ||||||| ||||| || |||||||||||    
T  8186421 tgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcga 8186486  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 21833241 - 21833410
Alignment:
Q  18 tcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttgacctcgctcacatgttccaacattt 117  Q
    ||||| |||||||| || ||| ||| |||||| |||  |||||||| || | || | ||||| ||||| ||||||||||| ||||| |||||||| |||     
T  21833241 tcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattg 21833340  T
Q  118 tttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaagaactcgaccttag 187  Q
     |  ||||| || ||||||| |||||||||||| | | |||||||| |||| ||||||||||||| ||||    
T  21833341 ctaatttcaataccactgacctgttcctcatcgtcgaatgtttccccttgcacgaagaactcgacgttag 21833410  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 1755606 - 1755548
Alignment:
Q  57 gggttgcaagctctttctcaaaatattacaactttgacctcgctcacatgttccaacat 115  Q
    |||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||    
T  1755606 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat 1755548  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 1547724 - 1547837
Alignment:
Q  75 caaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaag 174  Q
    ||||| |||||||||||||| || |||||||||||| ||||||    |  |   |||| |||||||||  |||| ||| ||||||||||||| |||||||    
T  1547724 caaaacattacaactttgacatctctcacatgttcccacatttcccgtccccaaagcattgacatgttgatcattgccgattgtttcccttttctcgaag 1547823  T
Q  175 aactcgaccttagt 188  Q
    ||||||||||||||    
T  1547824 aactcgaccttagt 1547837  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 571365 - 571256
Alignment:
Q  75 caaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaag 174  Q
    |||||||||||||||||||| || ||||  |||||| |||    |||| ||| || ||| ||| |||| |||||| |  | |||||||||||||||||||    
T  571365 caaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgtttccctttgctcgaag 571266  T
Q  175 aactcgacct 184  Q
    ||||| ||||    
T  571265 aactccacct 571256  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 641978 - 641933
Alignment:
Q  139 tgttcctcatcgccaattgtttccctttgctcgaagaactcgacct 184  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||||    
T  641978 tgttccttattgccaattgtttccctttactcgaagaacttgacct 641933  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 32152003 - 32151894
Alignment:
Q  75 caaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaag 174  Q
    ||||| ||||||||||||||||| ||||| |||||    |||| |||||||| | |||| ||| |||||||||| ||| |||||||||||||||||||||    
T  32152003 caaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccctttgctcgaag 32151904  T
Q  175 aactcgacct 184  Q
    |||| |||||    
T  32151903 aacttgacct 32151894  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 18314656 - 18314772
Alignment:
Q  72 tctcaaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcg 171  Q
    |||||||||||||||||||||||||| ||| |||||||  |||||   ||| ||  | |||||||  | |||||||| ||  ||||||||||||||||||    
T  18314656 tctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctgattgtttccctttgctcg 18314755  T
Q  172 aagaactcgaccttagt 188  Q
    |||||||||||||||||    
T  18314756 aagaactcgaccttagt 18314772  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 17635680 - 17635786
Alignment:
Q  78 aatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaagaac 177  Q
    |||||||||||||||||||| ||||| ||||||  ||||    || ||  ||||  |||||||||||||||||||  |||||||||||||||||||||||    
T  17635680 aatattacaactttgacctctctcacttgttcctgcattaacactctccgtagctttgacatgttcctcatcgccggttgtttccctttgctcgaagaac 17635779  T
Q  178 tcgacct 184  Q
    | |||||    
T  17635780 ttgacct 17635786  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 17643024 - 17643069
Alignment:
Q  143 cctcatcgccaattgtttccctttgctcgaagaactcgaccttagt 188  Q
    |||||||||  |||||||||||||||| ||||||||||| ||||||    
T  17643024 cctcatcgctgattgtttccctttgctagaagaactcgatcttagt 17643069  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 18318665 - 18318698
Alignment:
Q  76 aaaatattacaactttgacctcgctcacatgttc 109  Q
    |||||||||||||||||||||| |||||||||||    
T  18318665 aaaatattacaactttgacctcactcacatgttc 18318698  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 19467450 - 19467561
Alignment:
Q  73 ctcaaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcga 172  Q
    ||||||||||||||||||||||||| ||||| |||| | |||||     ||||| || ||||||| |||||||||||||  | ||||| |||||||||||    
T  19467450 ctcaaaatattacaactttgacctctctcacttgtttcgacattgcagatttcaataccactgacctgttcctcatcgcggaatgttttcctttgctcga 19467549  T
Q  173 agaactcgacct 184  Q
    ||||||| ||||    
T  19467550 agaactcaacct 19467561  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 7555233 - 7555124
Alignment:
Q  75 caaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaag 174  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||   |||| ||| ||||| |||| |||| ||||| ||  | |||||||||||||||||||    
T  7555233 caaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaag 7555134  T
Q  175 aactcgacct 184  Q
    ||||| ||||    
T  7555133 aactcaacct 7555124  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 6395591 - 6395545
Alignment:
Q  56 tgggttgcaagctctttctcaaaatattacaactttgacctcgctca 102  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||    
T  6395591 tgggttgcaagctctctcccaaaatattacaactttgacctctctca 6395545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 7993631 - 7993676
Alignment:
Q  139 tgttcctcatcgccaattgtttccctttgctcgaagaactcgacct 184  Q
    |||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  7993631 tgttactcattgccaattgtttccctttgctcaaagaactcaacct 7993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 7977908 - 7977799
Alignment:
Q  75 caaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaattgtttccctttgctcgaag 174  Q
    ||||||||| ||||||||||||| |||| |||||| ||||||   ||| | | || ||   ||||||| ||||| ||  |||||||||||||||| ||||    
T  7977908 caaaatattgcaactttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgcttgaag 7977809  T
Q  175 aactcgacct 184  Q
    ||||||||||    
T  7977808 aactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 10169068 - 10169112
Alignment:
Q  72 tctcaaaatattacaactttgacctcgctcacatgttccaacatt 116  Q
    ||||||||||||| |||||||||||| ||||| |||||| |||||    
T  10169068 tctcaaaatattagaactttgacctctctcacttgttccgacatt 10169112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 10176593 - 10176637
Alignment:
Q  72 tctcaaaatattacaactttgacctcgctcacatgttccaacatt 116  Q
    ||||||||||||| |||||||||||| ||||| |||||| |||||    
T  10176593 tctcaaaatattagaactttgacctctctcacttgttccgacatt 10176637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 1657581 - 1657474
Alignment:
Q  56 tgggttgcaagctctttctcaaaatattacaactttgacctcgctcacatgttccaacattttttctttcactagcactgacatgttcctcatcgccaat 155  Q
    ||||||||||||| | |||||||| |||| |||||| ||||| ||||| ||||||  ||||   ||| ||| | |||||||| |||||||||| ||  ||    
T  1657581 tgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacctgttcctcattgctgat 1657482  T
Q  156 tgtttccc 163  Q
    ||||||||    
T  1657481 tgtttccc 1657474  T

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