View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_20 (Length: 274)
Name: NF4127_low_20
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 2598290 - 2598097
Alignment:
| Q |
1 |
cctagcccatttggacctttgatttttctataatatttgttttttattaagaaaaaacacgagac-agtagttaattataatcttaaaccttggtgatgg |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
2598290 |
cctagcccatctggacctttgatttttctataatatttgttttctattaagaaaaaacacgaggccagtagttaattataatcttaaaccttggtgatgg |
2598191 |
T |
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| Q |
100 |
tttcacgaatttggtccccataagtatacttggtgatggcctccaagtatagcttggagttggattatgtcctatatatcagcttccaagaaac |
193 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2598190 |
tttcacgaatttggtccccataaatatacttggtgatggcctccaagtatagcttggagttggattatgtcctatatatcagcttccaagaaac |
2598097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2582984 - 2582849
Alignment:
| Q |
1 |
cctagcccatttggacctttgatttttctataatatttgttttttattaagaa-aaaacacgagacagtagttaattataatcttaaaccttggtgatgg |
99 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||| || |||||||||||||| |||||| |
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| T |
2582984 |
cctagcccatttggacctttgatttttcgataatatttgttttttattaagaaaaaaacacaagacagtaatta--ta-aatcttaaaccttgctgatgg |
2582888 |
T |
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| Q |
100 |
tttcacgaatttggtccccataagtatacttggtgatgg |
138 |
Q |
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|| |||||||||||||||||||| ||||||||||||||| |
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| T |
2582887 |
ttccacgaatttggtccccataattatacttggtgatgg |
2582849 |
T |
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