View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_24 (Length: 243)
Name: NF4127_low_24
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35106037 - 35105804
Alignment:
| Q |
1 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
35106037 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaat |
35105938 |
T |
|
| Q |
101 |
tcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaa |
200 |
Q |
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||||| ||| | |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| | ||| | |
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| T |
35105937 |
tcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaaga |
35105838 |
T |
|
| Q |
201 |
ttgaaacaaactgttttccctggtttttatgatg |
234 |
Q |
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| T |
35105837 |
ttgaaacaaactgttttccctgttttttatgatg |
35105804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35055124 - 35054891
Alignment:
| Q |
1 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaat |
100 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
35055124 |
atctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaat |
35055025 |
T |
|
| Q |
101 |
tcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaa |
200 |
Q |
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|| || ||| |||||| |||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||| | |||||||| || ||| | |
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| T |
35055024 |
tcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggctgcaattgctgattgttgtgagtat |
35054925 |
T |
|
| Q |
201 |
ttgaaacaaactgttttccctggtttttatgatg |
234 |
Q |
| |
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| T |
35054924 |
ttcaaacaaacagttttccctattttttatgatg |
35054891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35183986 - 35183753
Alignment:
| Q |
1 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaat |
100 |
Q |
| |
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||||| |||||||||||| || ||||||||||| || ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
35183986 |
atcttcatgctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaat |
35183887 |
T |
|
| Q |
101 |
tcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaa |
200 |
Q |
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| T |
35183886 |
tcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcatacagaa |
35183787 |
T |
|
| Q |
201 |
ttgaaacaaactgttttccctggtttttatgatg |
234 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| |
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| T |
35183786 |
ttgaaacagactgttttccctattttttatgatg |
35183753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35177988 - 35177756
Alignment:
| Q |
1 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaat |
100 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||||| | |||||||| ||||||||| |
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| T |
35177988 |
atctttatgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaat |
35177889 |
T |
|
| Q |
101 |
tcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaa |
200 |
Q |
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| || |||| | || ||||| ||||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||||| |||||| | | || |
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| T |
35177888 |
tgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaat |
35177789 |
T |
|
| Q |
201 |
ttgaaacaaactgttttccctggtttttatgat |
233 |
Q |
| |
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|| ||||||||||||||||| |||||||||| |
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| T |
35177788 |
ttcttacaaactgttttccctgttttttatgat |
35177756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 35169697 - 35169510
Alignment:
| Q |
1 |
atctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| | ||||| |||||| || ||||||||| |
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| T |
35169697 |
atctttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaat |
35169598 |
T |
|
| Q |
101 |
tcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaa |
188 |
Q |
| |
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| || |||| | |||||||||||||||||||| |||||||||| || ||||| |||||||||||||| |||||||| |||| |||| |
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| T |
35169597 |
tacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaa |
35169510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 25484341 - 25484514
Alignment:
| Q |
9 |
gctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagtt |
108 |
Q |
| |
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|||||||| || ||||| |||||||| ||||||||||||| | ||| ||||||||||| || ||||||| ||||||||||||||||||||| | |
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| T |
25484341 |
gctcatctcaatagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagt |
25484440 |
T |
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| Q |
109 |
caagaatttctattgttgtcttctctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt |
182 |
Q |
| |
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|| | |||||||| ||||| ||||| |||||| ||||| |||||| ||||||||||| || |||||| ||||| |
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| T |
25484441 |
cacgcatttctatcgttgttttctc-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt |
25484514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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