View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_25 (Length: 237)
Name: NF4127_low_25
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 38244927 - 38244700
Alignment:
| Q |
10 |
catcatcattgattgaagcatgtttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtct |
109 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
38244927 |
catcattattgattgaagcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtct |
38244828 |
T |
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| Q |
110 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38244827 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38244728 |
T |
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| Q |
210 |
aatattttgttgcattgggaacatgggt |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38244727 |
aatattttgttgcattgggaacatgggt |
38244700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 38261227 - 38261000
Alignment:
| Q |
10 |
catcatcattgattgaagcatgtttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtct |
109 |
Q |
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|||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
38261227 |
catcatcattgacataagcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcct |
38261128 |
T |
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| Q |
110 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttca |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38261127 |
ctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38261028 |
T |
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| Q |
210 |
aatattttgttgcattgggaacatgggt |
237 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
38261027 |
aatattttgttgcattttgaacatgggt |
38261000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 47285507 - 47285629
Alignment:
| Q |
54 |
acaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcac |
153 |
Q |
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|||| ||||| ||||||| |||| |||| ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
47285507 |
acagaaacaagagtagttgttccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttcac |
47285606 |
T |
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| Q |
154 |
tttcgaacttgtagtgacttgat |
176 |
Q |
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|||| |||||||||||||||| |
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| T |
47285607 |
tttcagtcttgtagtgacttgat |
47285629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 47307067 - 47307209
Alignment:
| Q |
57 |
ggaacaaaagtagttattccgtcattgagcttttg-aatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcactt |
155 |
Q |
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||||||||||||||| |||| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| | |||||||||||| |
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| T |
47307067 |
ggaacaaaagtagttgttccatcattgagcttttggaatcgga-gatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcactt |
47307165 |
T |
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| Q |
156 |
tcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtga |
202 |
Q |
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| T |
47307166 |
tctgacttgtagtgtattgatg---catgactagcaaatttttgtga |
47307209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 2589546 - 2589674
Alignment:
| Q |
46 |
aagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtc |
145 |
Q |
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|||||||||| ||||||||||||||| |||| |||||||||||||||||| | ||| ||||||||||| ||| |||| |||||||||||||||| || |
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| T |
2589546 |
aagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctcttttttctctc |
2589645 |
T |
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| Q |
146 |
ttcttcactttcgaacttgtagtgacttg |
174 |
Q |
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|||| | |||| ||||||||||||||| |
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| T |
2589646 |
ttctagagtttcagacttgtagtgacttg |
2589674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 10299610 - 10299735
Alignment:
| Q |
50 |
aacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctc-ttttttctgtcttc |
148 |
Q |
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|||||| ||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||| ||| |||| |||||||| |||||||| ||||| |
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| T |
10299610 |
aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctggagatttggtctcttttagatcatagacatgtatctctttttttctctcttc |
10299709 |
T |
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| Q |
149 |
ttcactttcgaacttgtagtgacttg |
174 |
Q |
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| | |||| ||||||||||||||| |
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| T |
10299710 |
tagagtttcagacttgtagtgacttg |
10299735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 2589923 - 2589833
Alignment:
| Q |
49 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttt |
139 |
Q |
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||||||| |||||||||| ||| |||| ||||||| |||||||| |||||| ||||||||| | |||||||| ||||||||||||| |
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| T |
2589923 |
caacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 22222657 - 22222532
Alignment:
| Q |
49 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
148 |
Q |
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||||||| | |||||| || ||| |||| ||||||| ||||||||||| ||| | ||||||| | |||||||| |||||||||||||||| ||||| |
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| T |
22222657 |
caacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttc |
22222558 |
T |
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| Q |
149 |
ttcactttcgaacttgtagtgacttg |
174 |
Q |
| |
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|| | |||| || ||||||||||||| |
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| T |
22222557 |
ttgagtttcaaaattgtagtgacttg |
22222532 |
T |
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