View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_28 (Length: 213)
Name: NF4127_low_28
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 36593436 - 36593626
Alignment:
| Q |
18 |
aaacatgaaaaagaaacatagactaatgttcctctcaacaatnnnnnnnnnnnntagatcactaatgtttttcattaaacttaataactgctttttccag |
117 |
Q |
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| T |
36593436 |
aaacatgaaaaagaaacatagactaatgttcctctcaacaataaaaaataaaaatagatcactaatgtttttcattaaacttaataactgctttttccag |
36593535 |
T |
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| Q |
118 |
ctgactccacttctgctccaatgttccaatgtatccaactgacatcctcaccatacctggtgtgattccagcaagtctctgctcctcctca |
208 |
Q |
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| T |
36593536 |
ctgactccacttctgctccaatgttccaatgtatccaactgacatcctcaccatacctggtgtgattccagcaagcttctgttcctcctca |
36593626 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 34813262 - 34813174
Alignment:
| Q |
104 |
actgctttttccagctgactccacttctgctccaatgttccaatgtatccaactgacatcctcaccatacctggtgtgattccagcaag |
192 |
Q |
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||||| ||||| |||||| |||| ||||||||||| || ||||| || || |||||||||||||| | |||||||| ||||||||||| |
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| T |
34813262 |
actgccttttcaagctgattccatttctgctccaaagtcccaatataccctactgacatcctcacaagacctggtgaaattccagcaag |
34813174 |
T |
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