View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_29 (Length: 212)
Name: NF4127_low_29
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 38244648 - 38244485
Alignment:
| Q |
1 |
tttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttg |
100 |
Q |
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| T |
38244648 |
tttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttg |
38244549 |
T |
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| Q |
101 |
tgatgataaacctacatcaagatcaagatgagaagaagtagtagaagtattcattttcatcatc |
164 |
Q |
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| T |
38244548 |
tgatgataagcctacatgaagatcaagatgagaagaagtagtagaagtattcattttcatcatc |
38244485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38260948 - 38260812
Alignment:
| Q |
1 |
tttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttg |
100 |
Q |
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||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||| ||| | | ||| || ||||||||||||||||||||| ||| |
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| T |
38260948 |
tttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattg |
38260850 |
T |
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| Q |
101 |
tgatgataaacctacatcaagatcaagatgagaagaag |
138 |
Q |
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| T |
38260849 |
tgatgataagcctacatggagatcaagatgagaagaag |
38260812 |
T |
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