View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_low_3 (Length: 497)

Name: NF4127_low_3
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_low_3
NF4127_low_3
[»] chr3 (23 HSPs)
chr3 (323-482)||(22368198-22368357)
chr3 (323-482)||(22468234-22468393)
chr3 (323-482)||(22630725-22630884)
chr3 (327-479)||(22358291-22358443)
chr3 (339-479)||(22354100-22354242)
chr3 (326-479)||(22635792-22635945)
chr3 (323-459)||(22443048-22443184)
chr3 (323-427)||(22632206-22632310)
chr3 (341-482)||(22431438-22431578)
chr3 (326-482)||(22436920-22437076)
chr3 (341-476)||(22458781-22458916)
chr3 (341-476)||(22481762-22481897)
chr3 (122-169)||(22437914-22437961)
chr3 (127-219)||(22439904-22439998)
chr3 (274-327)||(22359155-22359208)
chr3 (274-327)||(22369057-22369110)
chr3 (1-61)||(22440132-22440192)
chr3 (129-165)||(22449356-22449392)
chr3 (360-459)||(21945682-21945781)
chr3 (327-406)||(22615621-22615700)
chr3 (360-418)||(2818650-2818708)
chr3 (325-459)||(21937176-21937310)
chr3 (357-418)||(2797451-2797512)
[»] chr8 (1 HSPs)
chr8 (360-408)||(27294606-27294654)
[»] chr1 (1 HSPs)
chr1 (357-457)||(34980217-34980317)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 323 - 482
Target Start/End: Complemental strand, 22368357 - 22368198
Alignment:
Q  323 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 422  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22368357 agagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgtt 22368258  T
Q  423 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 482  Q
    ||||| ||||| |||| | ||||||||||||| |||||||||||||||||||||||||||    
T  22368257 aaacactttgattgtcgtttatggatcacggtttctcgaccatataataaagaaaaattg 22368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 323 - 482
Target Start/End: Complemental strand, 22468393 - 22468234
Alignment:
Q  323 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 422  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  22468393 agagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgtt 22468294  T
Q  423 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 482  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22468293 aaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattg 22468234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 323 - 482
Target Start/End: Complemental strand, 22630884 - 22630725
Alignment:
Q  323 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 422  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  22630884 agagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgtt 22630785  T
Q  423 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 482  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||| ||||    
T  22630784 aaacactttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattg 22630725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 327 - 479
Target Start/End: Complemental strand, 22358443 - 22358291
Alignment:
Q  327 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaac 426  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||    
T  22358443 ggaagagcagaccggacaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaac 22358344  T
Q  427 attttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaa 479  Q
    | |||||  ||| ||||||||| ||||||||||||||||| |||| |||||||    
T  22358343 actttgatcgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaa 22358291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 22354242 - 22354100
Alignment:
Q  339 cgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||| |||||  | ||||| |||     
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgtt 22354143  T
Q  439 atg--tatggatcacggtgtctcgaccatataataaagaaaaa 479  Q
    |||  ||||||||||||| ||||||||||| || | |||||||    
T  22354142 atgtatatggatcacggtatctcgaccatacaacatagaaaaa 22354100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 479
Target Start/End: Complemental strand, 22635945 - 22635792
Alignment:
Q  326 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 425  Q
    |||||||||| | || ||| ||||||||||  |||||||||||||||  ||||||| |||||| || ||||||||||||||||||| ||||||||| |||    
T  22635945 gggaagagcagaccggacaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaa 22635846  T
Q  426 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaa 479  Q
     | ||||| |||| ||||||||| ||||||||||||||||| |||| |||||||    
T  22635845 tactttgattgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaa 22635792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 459
Target Start/End: Complemental strand, 22443184 - 22443048
Alignment:
Q  323 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 422  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||   || ||||||||||||||||||| |||    
T  22443184 agagggaagagaagaccgcacagttgtctccattgttggaatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagtt 22443085  T
Q  423 aaacattttgactgtcatgtatggatcacggtgtctc 459  Q
    || || |||||||||| | ||||||||| ||||||||    
T  22443084 aagcactttgactgtcttttatggatcatggtgtctc 22443048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 22632310 - 22632206
Alignment:
Q  323 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 422  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||    
T  22632310 agagggaagagcagatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgtt 22632211  T
Q  423 aaaca 427  Q
    |||||    
T  22632210 aaaca 22632206  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 482
Target Start/End: Complemental strand, 22431578 - 22431438
Alignment:
Q  341 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 440  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||| | | |||| ||||||| ||||| |||| |    
T  22431578 cacagtggtctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgt 22431480  T
Q  441 gtatggatcacggtgtctcgaccatataataaagaaaaattg 482  Q
     |||||||||| ||||||| ||||||| ||| ||||||||||    
T  22431479 ttatggatcacagtgtctcaaccatatgatatagaaaaattg 22431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 482
Target Start/End: Complemental strand, 22437076 - 22436920
Alignment:
Q  326 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 425  Q
    |||||||| | ||||  |||||||||| ||||| ||||||||||| |  |||||||  ||||| ||||||||||||||||| |||   || ||| | |||    
T  22437076 gggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaa 22436977  T
Q  426 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 482  Q
    || ||||||||||||||||||||||| ||||||| | |||| | |||||||||||||    
T  22436976 caatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattg 22436920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 476
Target Start/End: Complemental strand, 22458916 - 22458781
Alignment:
Q  341 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 440  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22458916 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22458817  T
Q  441 gtatggatcacggtgtctcgaccatataataaagaa 476  Q
    ||||||||||  ||||||| | |||| |||| ||||    
T  22458816 gtatggatcagagtgtctcaatcatacaatatagaa 22458781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 476
Target Start/End: Complemental strand, 22481897 - 22481762
Alignment:
Q  341 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 440  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22481897 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22481798  T
Q  441 gtatggatcacggtgtctcgaccatataataaagaa 476  Q
    ||||||||||  ||||||| | |||| |||| ||||    
T  22481797 gtatggatcagagtgtctcaatcatacaatatagaa 22481762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 22437961 - 22437914
Alignment:
Q  122 acacttcacattgcatagccaattgcccattcaaagctaaattattta 169  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  22437961 acacctcacattgcatagccaattgcccattcaaaactaaattattta 22437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 22439998 - 22439904
Alignment:
Q  127 tcacattgcatagccaattgcccattcaaagc-----taaattatttaactagttagatgaatgatctgaagagctgggtatcttatctattccgaat 219  Q
    |||||||||||||||||||| | ||||||| |     ||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||||||||||    
T  22439998 tcacattgcatagccaattggcgattcaaaactaatttaaattatttaactagtgagatgaatgatc--aagagct-ggtgtcttatctattccgaat 22439904  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 22359208 - 22359155
Alignment:
Q  274 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 327  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22359208 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22359155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 22369110 - 22369057
Alignment:
Q  274 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 327  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22369110 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22369057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22440192 - 22440132
Alignment:
Q  1 tgaattagtaaaagctaatcctacaaaaataattaaagaacgaccatggaaattaagaaag 61  Q
    ||||||| ||||| |||| | || |||||||||||||||||||||||||||||||| ||||    
T  22440192 tgaattaataaaatctaaccttaaaaaaataattaaagaacgaccatggaaattaacaaag 22440132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 22449356 - 22449392
Alignment:
Q  129 acattgcatagccaattgcccattcaaagctaaatta 165  Q
    |||||||||||||||||||||||||||| ||||||||    
T  22449356 acattgcatagccaattgcccattcaaaactaaatta 22449392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 459
Target Start/End: Original strand, 21945682 - 21945781
Alignment:
Q  360 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctc 459  Q
    ||||||||||| |  ||||||| |||||| ||||||||||||||||||| | |  | ||| ||  ||| ||||| |||| |||||||||||| |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 22615700 - 22615621
Alignment:
Q  327 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 406  Q
    ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| |||| ||||||||||||||| ||||||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 2818650 - 2818708
Alignment:
Q  360 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 418  Q
    |||||||| || || ||||||| |||||||||||||  ||||||||||| |||||||||    
T  2818650 ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggt 2818708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 459
Target Start/End: Original strand, 21937176 - 21937310
Alignment:
Q  325 agggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaa 424  Q
    ||||||| ||| ||||||| ||||| ||  | || ||||||||||| |  ||||||| |||||| || ||||||| |||||||| | |  | ||||||      
T  21937176 agggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttgg 21937275  T
Q  425 acattttgactgtcatgtatggatcacggtgtctc 459  Q
    ||| ||||| |||| |||||||||||| |||||||    
T  21937276 acactttgattgtcgtgtatggatcacagtgtctc 21937310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 2797451 - 2797512
Alignment:
Q  357 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 418  Q
    |||||||||||||| || ||||||| |||||||||||||  |||||| ||||  ||||||||    
T  2797451 gttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggt 2797512  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  360 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 408  Q
    |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 34980217 - 34980317
Alignment:
Q  357 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgt 456  Q
    |||||||||||||| |  |||||||| |||||||| || ||||||||||| | | || |||| ||   ||| ||||| |||| |||||||||||| ||||    
T  34980217 gttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgt 34980316  T
Q  457 c 457  Q
    |    
T  34980317 c 34980317  T

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