View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_low_5 (Length: 453)
Name: NF4127_low_5
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_low_5 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 49330632 - 49331066
Alignment:
| Q |
1 |
atcaaattggatggggaagctgtaatataagcaactcaactgaacaatttcgctgttttttatttgaagaatttagcaaaacaatgtcgaaaaattacaa |
100 |
Q |
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|||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||| ||| ||||| |||||| |
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| T |
49330632 |
atcaaattggatggtgaaactgaaatataagcaactcaattgaacaatttcgctgttttttatatgtaaaatttagcaaaacagtgtggaaaagttacaa |
49330731 |
T |
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| Q |
101 |
aggaaaattataatgtttggtttatgttactatgccgttcgcaagaagggaattaatacatcacatgtgttgactaggaggatatcaatgaataagttga |
200 |
Q |
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|||||||||||||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||| |
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| T |
49330732 |
aggaaaattataatcttaggtttatgttagtatgtcgttcgcaagaagggaagtaatacatcacatgtgttaact---aggatagtaatgaacaagttga |
49330828 |
T |
|
| Q |
201 |
tttgttgttttgtatctattcctccatttgattttgttctatatggattcatattttgaccctgatatttactctctattttgcacttatttg--nnnnn |
298 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49330829 |
attgttgttttgtatctattcctccatgtgatattgttctacgtggattgatattttaaccctgatatttactctctattttgcacttatttgaataaaa |
49330928 |
T |
|
| Q |
299 |
nnnnttgttaatttatatgacgatacgaagagtgcgttagaggtgagatgaataacgtttttcgattttaaaagagtttgcgaaagtgtgagttaaaata |
398 |
Q |
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|||||| ||||||||| |||||||||||||| ||||||| | | ||||||| |||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
49330929 |
aaaattgttagtttatatgatgatacgaagagtgctttagagg-ggggtgaataatgttttttgattttaaaagagtttgcgaaagtctgagttaaaata |
49331027 |
T |
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| Q |
399 |
cgattacgactatcggattatactttattatgatgatat |
437 |
Q |
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| T |
49331028 |
cgattatgactatcggattatgcttgattatgatgatat |
49331066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 21486561 - 21486685
Alignment:
| Q |
312 |
tatatgacgatacgaagagtgcgttagaggtgagatgaataacgtttttcgattttaaaagagtttgcgaaagtgtgagttaaaatacgattacgactat |
411 |
Q |
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||||||| ||||||||||||||| |||||| | | |||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| || ||| |
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| T |
21486561 |
tatatgatgatacgaagagtgcgctagaggggc-acaaatagtgtttttcgattttaaaagagtttgagaaaatgtgagttaaaatatgattatgattat |
21486659 |
T |
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| Q |
412 |
cggattatactttattatgatgatat |
437 |
Q |
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| T |
21486660 |
tgaattgtgcttgattatgatgatat |
21486685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 21585244 - 21585333
Alignment:
| Q |
348 |
gaataacgtttttcgattttaaaagagtttgcgaaagtgtgagttaaaatacgattacgactatcggattatactttattatgatgatat |
437 |
Q |
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|||||||| ||||| |||||||||||||||| ||||| ||||||||||| ||||||| ||||||| ||| | || ||||||||||||| |
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| T |
21585244 |
gaataacgcttttcaattttaaaagagtttgtgaaagcgtgagttaaaacacgattatgactatcatattgtgtttgattatgatgatat |
21585333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4660434 - 4660393
Alignment:
| Q |
1 |
atcaaattggatggggaagctgtaatataagcaactcaactg |
42 |
Q |
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| T |
4660434 |
atcaaattggatggggaagttgtaatataagcaactcaactg |
4660393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20599 - 20558
Alignment:
| Q |
1 |
atcaaattggatggggaagctgtaatataagcaactcaactg |
42 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
20599 |
atcaaattggatggggaagttgtaatataagcaactccactg |
20558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7732 - 7691
Alignment:
| Q |
1 |
atcaaattggatggggaagctgtaatataagcaactcaactg |
42 |
Q |
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||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
7732 |
atcaaatcggagggggaagttgtaatataagcaactcaactg |
7691 |
T |
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