View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_high_10 (Length: 300)
Name: NF4128_high_10
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 2097182 - 2096915
Alignment:
| Q |
26 |
tagtagcaatcgccaaccaagcattcactgtcaagtactccataaatgaaaactaatagtagtatgaagcatttattatgcttaacagacaacgtttaac |
125 |
Q |
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| T |
2097182 |
tagtagcaatcgccaaccaagcattcactgtcaagtactccataaatgaaaactaatagtagtatgaagcatttattatgcttaacagacagcgtttaac |
2097083 |
T |
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| Q |
126 |
taataacgtatctatatacaaatggcttgcatg----catgaacataatccgactttacagggtggaacccttctggcttgctctatacctcactcctca |
221 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2097082 |
taataacgtatctatatacaaatggcttgcatgcatgcatgaacataatccgactttacagggtggaatccttctggcttgctctatacctcactcctca |
2096983 |
T |
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| Q |
222 |
tgaataattatctaactatatttctgcaaacttctaaatatttcaattcctgaattccctcgtcctat |
289 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2096982 |
tgaataattatctaactatatttctgctaacttctaaatatttcaattcctgaattccctcgtcctat |
2096915 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 12606924 - 12606960
Alignment:
| Q |
67 |
ataaatgaaaactaatagtagtatgaagcatttatta |
103 |
Q |
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| T |
12606924 |
ataaatgaaaactaatactagcatgaagcatttatta |
12606960 |
T |
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