View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_high_13 (Length: 232)

Name: NF4128_high_13
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_high_13
NF4128_high_13
[»] chr8 (2 HSPs)
chr8 (13-214)||(2543076-2543277)
chr8 (91-214)||(2533511-2533634)
[»] chr4 (4 HSPs)
chr4 (77-193)||(15664343-15664460)
chr4 (81-198)||(31984986-31985105)
chr4 (87-197)||(30252114-30252225)
chr4 (77-200)||(30785527-30785651)
[»] chr7 (1 HSPs)
chr7 (118-201)||(42675303-42675387)
[»] chr2 (2 HSPs)
chr2 (106-200)||(29150416-29150511)
chr2 (77-137)||(28148478-28148538)
[»] chr5 (2 HSPs)
chr5 (108-185)||(12465693-12465771)
chr5 (77-154)||(33318288-33318366)
[»] chr1 (1 HSPs)
chr1 (77-181)||(47288839-47288943)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 2543277 - 2543076
Alignment:
Q  13 agatgaatatgagaaggggttgaagaatgcaagaaacacctccacgaatgtcttgcattgcaggtagctacctcaataatatatatgtagttaccacaaa 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2543277 agatgaagatgagaaggggttgaagaatgcaagaaacacctccacgaatgtcttgcattgcaggtagctacctcaataatgtatatgtagttaccacaaa 2543178  T
Q  113 tgaacttatttatcaaaaactagtaaaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacacttctaatagtttaa 212  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2543177 cgaatttatttatcaaaaactagtaaaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacacttctaatagtttaa 2543078  T
Q  213 ac 214  Q
    ||    
T  2543077 ac 2543076  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 2533634 - 2533511
Alignment:
Q  91 atatatatgtagttaccacaaatgaacttatttatcaaaaactagtaaaa-taagaaagtcaaaagacatctacttgtttgatagatgtattttgtctta 189  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  2533634 atatatatatagttaccacaaatgaatttatttatcaaaaactagtaaaaataagaaagtcaaa-gacatctacttgtttgatagatgtattttgtttta 2533536  T
Q  190 ttttgacacttctaatagtttaaac 214  Q
    |||||||||||||||||||||||||    
T  2533535 ttttgacacttctaatagtttaaac 2533511  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 15664460 - 15664343
Alignment:
Q  77 tagctacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgataga 175  Q
    |||||||| |||||| |||||| ||| |||| |||||||  |||||| |||||| |||||| ||||| |||| |||||||| || |||||||||||||||    
T  15664460 tagctaccacaataaaatatatttagctaccgcaaatgagtttatttgtcaaaagctagtagaaataggaaaatcaaaagatatttacttgtttgataga 15664361  T
Q  176 tgtattttgtcttatttt 193  Q
    ||| || |||||||||||    
T  15664360 tgttttatgtcttatttt 15664343  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 31984986 - 31985105
Alignment:
Q  81 tacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactagtaaaa----taagaaagtcaaaagacatctacttgtttgatagat 176  Q
    |||| ||||||||||||| ||| ||| |  |||||| |||||| |||||||||| |||||    ||||||||| |||||| ||| |||| ||||||||||    
T  31984986 taccgcaataatatatatttagctacta--aatgaatttatttttcaaaaactaataaaaaaaataagaaagtaaaaagaaatcaacttatttgatagat 31985083  T
Q  177 gtattttgtcttattttgacac 198  Q
    ||||||||||||||||| ||||    
T  31985084 gtattttgtcttattttcacac 31985105  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 30252114 - 30252225
Alignment:
Q  87 aataatatatatgtagttaccacaaatgaacttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgatagatgtattttgt 185  Q
    ||||| |||||| ||||||| ||||||||  |||||| |  |||||||||| |||||| || || || ||| | | |||||||| ||||||||||||| |    
T  30252114 aataacatatatttagttactacaaatgagtttatttgttgaaaactagtagaaataaaaatgttaatagatacccacttgttttatagatgtattttct 30252213  T
Q  186 cttattttgaca 197  Q
    ||||||||||||    
T  30252214 cttattttgaca 30252225  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 30785651 - 30785527
Alignment:
Q  77 tagctacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgataga 175  Q
    |||||||| ||||||||||||| ||| ||||  |||  ||  ||||| ||||||| ||||| ||||| ||||| ||||| | ||  |||||||| |||||    
T  30785651 tagctaccccaataatatatatttagctaccgtaaaaaaatctatttgtcaaaaattagtagaaataggaaagccaaaatatattcacttgtttaataga 30785552  T
Q  176 tgtattttgtcttattttgacactt 200  Q
    | ||||  || ||||||||||||||    
T  30785551 tatattccgtattattttgacactt 30785527  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 42675387 - 42675303
Alignment:
Q  118 ttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacacttc 201  Q
    |||||| ||||||||||||| |||| | |||||||||||| |||||||||||||||||| ||||||  |||||||||||||||||    
T  42675387 ttatttgtcaaaaactagtagaaattaaaaagtcaaaagatatctacttgtttgatagaagtatttgatcttattttgacacttc 42675303  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 29150416 - 29150511
Alignment:
Q  106 ccacaaatgaacttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacactt 200  Q
    ||||||||||  ||| || ||||||||||||| ||||| |||||   ||||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  29150416 ccacaaatgagtttaattgtcaaaaactagtagaaataggaaagcttaaagatatccacttgtttgatagatgtatttcgtcttattttgacactt 29150511  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 28148478 - 28148538
Alignment:
Q  77 tagctacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactagta 137  Q
    |||||||| |||||||| |||| ||| |||| ||||| |  ||||||||||||||||||||    
T  28148478 tagctaccccaataataaatatttagctaccgcaaataagtttatttatcaaaaactagta 28148538  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 12465771 - 12465693
Alignment:
Q  108 acaaatgaacttatttatcaaaaactagtaa-aataagaaagtcaaaagacatctacttgtttgatagatgtattttgt 185  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||| | || ||||||| ||||| || ||||||||    
T  12465771 acaaatgagtttatttatcaaaaactagtaagaataagaaagtcaaaaaatatatacttgtatgataaatatattttgt 12465693  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 33318366 - 33318288
Alignment:
Q  77 tagctacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactag-taaaataagaaagtcaaaa 154  Q
    |||||||||| ||||||||||| | | ||||| ||||||| |||||| ||||||||||| | |||||||||||||||||    
T  33318366 tagctacctcgataatatatattttgctaccataaatgaatttatttgtcaaaaactagttgaaataagaaagtcaaaa 33318288  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 47288839 - 47288943
Alignment:
Q  77 tagctacctcaataatatatatgtagttaccacaaatgaacttatttatcaaaaactagta-aaataagaaagtcaaaagacatctacttgtttgataga 175  Q
    |||||||| |||||| |||||| ||| |||||||||||  ||||||| ||||||| ||||| || | |||||||||||||| ||  | ||||||||||||    
T  47288839 tagctacc-caataaaatatatttagctaccacaaatgtgcttatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgataga 47288937  T
Q  176 tgtatt 181  Q
    ||||||    
T  47288938 tgtatt 47288943  T

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