View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4128_high_6 (Length: 364)
Name: NF4128_high_6
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 45500949 - 45501283
Alignment:
| Q |
14 |
atcaacattgttggcctgcaaatttcattttaaaatgagagatgtttatcggtaaataaaggacgatgcaccttatctttataactagtaggacagtatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45500949 |
atcaacattgttggcctgcaaatttcattttaaaatgagagatgtttatcagtaaataaaggacgatgcaccttatctttataactagtaggacagtatg |
45501048 |
T |
|
| Q |
114 |
agtactagttatatataatgagtgacctcaagaattggcaggaggtgtgttaagagctctttggtgtcgccgtggtgccctatgcttctcactggatgat |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45501049 |
agtgctagttatatataatgagtgacctcaagaattggcaggaggtgtgttaagagctctttggtgtcgccgtggtgccctatgcttctcactggatgat |
45501148 |
T |
|
| Q |
214 |
gtcccacaacaatcttccacttggcagttgaatctctcagtgctgtttccagatccttagtttagaatcacacacatgcaaaaaagaactattaaatcac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45501149 |
gtcccacaacaatcttccacttggcagttgaatctctcagtgctgtttccagatccttcgtttagaatcacacacatgcaaaaaagaactattaaatcac |
45501248 |
T |
|
| Q |
314 |
cttttatcttaataatatctgtgatgaggagactt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45501249 |
cttttatcttaataatatctgtgatgaggagactt |
45501283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University