View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_high_9 (Length: 315)

Name: NF4128_high_9
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_high_9
NF4128_high_9
[»] chr1 (20 HSPs)
chr1 (1-300)||(35476151-35476450)
chr1 (107-235)||(45531481-45531610)
chr1 (117-242)||(35248176-35248302)
chr1 (1-162)||(45525454-45525612)
chr1 (109-195)||(35219016-35219101)
chr1 (100-164)||(35211948-35212012)
chr1 (2-163)||(35224899-35225060)
chr1 (111-191)||(35190329-35190410)
chr1 (100-164)||(35204881-35204945)
chr1 (1-157)||(35295876-35296032)
chr1 (111-188)||(35147324-35147402)
chr1 (111-163)||(35199918-35199970)
chr1 (114-196)||(35270386-35270471)
chr1 (1-196)||(8638852-8639049)
chr1 (1-41)||(35212074-35212114)
chr1 (111-240)||(35262918-35263049)
chr1 (100-157)||(35194484-35194542)
chr1 (1-41)||(34309457-34309497)
chr1 (1-41)||(35190471-35190511)
chr1 (1-41)||(35270544-35270584)
[»] chr3 (5 HSPs)
chr3 (100-179)||(899875-899954)
chr3 (1-78)||(17664587-17664664)
chr3 (106-147)||(53924385-53924426)
chr3 (1-164)||(19246990-19247153)
chr3 (103-164)||(17664689-17664750)
[»] chr7 (1 HSPs)
chr7 (110-195)||(38631839-38631923)
[»] chr2 (1 HSPs)
chr2 (108-164)||(33138746-33138801)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35476450 - 35476151
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476450 tgatgggtggttggagattgagatgggagagttctttaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 35476351  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatgacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35476350 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatgacag 35476251  T
Q  201 aatactgcttgaagatttgaagtctcaacttttcaacatattgtgatttatattcatgttccaaacggtctatttgtaaattatatttcttattataatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476250 aatactgcttgaagatttgaagtctcaacttttcaacatattgtgatgtatattcatgttccaaacggtctatttgtaaattatatttcttattataatt 35476151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 45531610 - 45531481
Alignment:
Q  107 aatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgt-aggggtcttgcgtcttggatgacaaaatac 205  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||| | |||||||| ||||||||||  | ||||     
T  45531610 aatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaactttcagtgaactatgtcatgggtcttgtgtcttggatggtagaatag 45531511  T
Q  206 tgcttgaagatttgaagtctcaacttttca 235  Q
    ||||||||||||||||||  ||||||||||    
T  45531510 tgcttgaagatttgaagttccaacttttca 45531481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 35248302 - 35248176
Alignment:
Q  117 ttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatgacaaaatactgcttgaaga 215  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||  |||||||||  |||||||||| || || |  | |||||||    
T  35248302 ttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactgaactatgcaaggggtcttatgtcttggatggcagaacaacgtttgaaga 35248203  T
Q  216 tttgaagtctcaacttttcaacatatt 242  Q
    ||||||||  |||||||||||||||||    
T  35248202 tttgaagttccaacttttcaacatatt 35248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 45525612 - 45525454
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| |||||||   |||| | |||| | |  || ||||||||| || |||||||| |||||| | | || |  | |     
T  45525612 tgatgggtggttggagattgagatgggagagttc---aattcaggccttgaaaatgaagaagtccagatgagtgttatcgagataaaggctggtgagacc 45525516  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacatt 162  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  45525515 aaggggaatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaacatt 45525454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 35219101 - 35219016
Alignment:
Q  109 tttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggat 195  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||| |||| |||||||||| |||||||||    
T  35219101 tttctttgttgaaggaatagaagttaggcctaaggaagacaa-taaacaacatacactgaactatgcaggggtcttgtgtcttggat 35219016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 35212012 - 35211948
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  35212012 gaagggaaatttctatcttgaaggaatagaacttagacctaaggtagacaattaaacaacattca 35211948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 35225060 - 35224899
Alignment:
Q  2 gatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccga 101  Q
    ||||| ||||| ||||||||||||| ||||||||| | || | |||| | || || ||||||||| || ||||||||||| ||| | |||| |     ||    
T  35225060 gatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgttattgatataaagggtggtcattgga 35224961  T
Q  102 agggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattc 163  Q
    || ||  ||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||    
T  35224960 agagaggtttctttgttgaaggaatagaagttaggcctaaggaagaccattaggcaacattc 35224899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 35190410 - 35190329
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtctt 191  Q
    ||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||  |||| ||||  ||||||||||||||||    
T  35190410 tctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacattccgtgaactatgcaaggggtcttgcgtctt 35190329  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 35204945 - 35204881
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||| ||||    
T  35204945 gaagggaaatttctttcttgaaggaatagaacttaggcctaaggtatacaattaaacaactttca 35204881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 35295876 - 35296032
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| ||||||||| |||| | || | | || || ||||||||| || |||||||| || | | | |||| |  |  |    
T  35295876 tgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgagtgttatggatacaaagggtggtcagggg 35295975  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagca 157  Q
    |||  |  ||| ||||||||||||||||||||||| ||||||||||  |||||||||    
T  35295976 aagacaggtttatttcttgaaggaatagaagttaggcctaaggaaggaaattaagca 35296032  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 35147402 - 35147324
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgt 188  Q
    ||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||  |||| ||||  |||||||||||||    
T  35147402 tctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacattccatgaactatgcaaggggtcttgcgt 35147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 35199970 - 35199918
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattc 163  Q
    |||||||||||||||||||||| || |||||| |||||||||||| |||||||    
T  35199970 tctttcttgaaggaatagaagtcaggcctaagtaagacaattaagtaacattc 35199918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 35270471 - 35270386
Alignment:
Q  114 ttcttgaaggaatagaagttagacctaag--gaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatg 196  Q
    |||||||||||||||||||||| ||||||   || |||||||| |||||||||||||| ||||  |||||||||| ||| ||||||    
T  35270471 ttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacattcactgaactatgcaaggggtcttgggtcgtggatg 35270386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8639049 - 8638852
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagata---gatggtgatttg 97  Q
    ||||||||||||||||| |||||||| ||||||||| |||| | || | | || || ||||||||| || ||| ||| || ||||   |||||| ||       
T  8639049 tgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagtattactgggataaaggatggttatact 8638950  T
Q  98 ccgaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatg 196  Q
      |||| ||  ||||||| ||||||||||||||||||| || |||||||| || ||| ||| ||  ||| || |||| |||||||||| ||||||||||    
T  8638949 tggaagagaggtttctttgttgaaggaatagaagttaggcccaaggaagataa-taatcaatataaactaaactatggaggggtcttgtgtcttggatg 8638852  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35212114 - 35212074
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  35212114 tgatgggtggttggagattgagatgggagagttcttcaatt 35212074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 35263049 - 35262918
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatgacaaaatactgct 209  Q
    |||||||||||||||||||| |||| |||||  || ||||||||||| |||| |||  | ||||  |||||||||| ||||||| || || |||| || |    
T  35263049 tctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgcaaggggtcttgtgtcttggttggcagaataatgtt 35262950  T
Q  210 tgaaga-tttgaagtctcaacttttcaacata 240  Q
    |  ||| || |||||| |||||||||||||||    
T  35262949 tctagagttggaagtcccaacttttcaacata 35262918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 35194542 - 35194484
Alignment:
Q  100 gaagggaaatttctttcttg-aaggaatagaagttagacctaaggaagacaattaagca 157  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||||| | |||||||||    
T  35194542 gaagagaaatttctttcttttaaggaatagaagttagtcctaaggaaaagaattaagca 35194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34309497 - 34309457
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||| ||||||||||||||||||| ||||||||| ||||    
T  34309497 tgatggatggttggagattgagatgggagagttcttcaatt 34309457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35190511 - 35190471
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  35190511 tgatgggtggttggagattgagatcggagagttcttcaatt 35190471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35270584 - 35270544
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    ||||||||||||||||||||||||||  |||||||| ||||    
T  35270584 tgatgggtggttggagattgagatgggggagttcttcaatt 35270544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 899875 - 899954
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggg 179  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||| ||||||||| ||||    
T  899875 gaagggaaatttctttcttgaaggaatagaagttaggcctaaggaggaaaattaagcaatattcattgaattatgcaggg 899954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17664587 - 17664664
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttat 78  Q
    |||||| ||||||||||||||||||| ||| ||||| |||| | |||||  || || |||||||||||| ||||||||    
T  17664587 tgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaagtccacatgagtgttat 17664664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 53924385 - 53924426
Alignment:
Q  106 aaatttctttcttgaaggaatagaagttagacctaaggaaga 147  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  53924385 aaatttctttcttgaaggaatagaagttaggcctaagtaaga 53924426  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19246990 - 19247153
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||| ||||||||||||||||||| ||| ||||| |||| | |||||  || || |||| ||||||| ||||||||  |||    ||||   | |  |    
T  19246990 tgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaaatccacatgagtgttatccagaggagtggtacgtgggtg 19247089  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    | ||||||||| ||| |||||||||| |||||||| |||||| | | ||||||||||| |||||    
T  19247090 aggggaaatttgtttattgaaggaatcgaagttaggcctaagtatggcaattaagcaatattca 19247153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 17664689 - 17664750
Alignment:
Q  103 gggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    ||||||||| ||| |||||||||| |||||||| |||||| | | ||||||||||| |||||    
T  17664689 gggaaatttgtttattgaaggaatcgaagttaggcctaagtatggcaattaagcaatattca 17664750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 38631923 - 38631839
Alignment:
Q  110 ttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggat 195  Q
    |||||| |||||||||||||||||||  | || |||||||||| ||||||||| |||||| ||||  |||||||||| |||||||||    
T  38631923 ttctttgttgaaggaatagaagttaggac-aaagaagacaatttagcaacattgactgaa-tatgcaaggggtcttgtgtcttggat 38631839  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 33138746 - 33138801
Alignment:
Q  108 atttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    |||| ||| ||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  33138746 atttgtttattgaaggaatagaagttag-cctaagtaagagaattaagcaatattca 33138801  T

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