View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_1 (Length: 980)

Name: NF4128_low_1
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_1
NF4128_low_1
[»] chr6 (4 HSPs)
chr6 (16-973)||(11407629-11408586)
chr6 (339-401)||(19788107-19788169)
chr6 (353-398)||(5325828-5325873)
chr6 (358-398)||(30692993-30693033)
[»] chr8 (4 HSPs)
chr8 (354-402)||(34756002-34756050)
chr8 (354-398)||(40444142-40444186)
chr8 (356-398)||(21649592-21649634)
chr8 (358-399)||(31761895-31761936)
[»] chr7 (3 HSPs)
chr7 (344-399)||(17036754-17036808)
chr7 (339-398)||(14573909-14573968)
chr7 (18-182)||(17035049-17035213)
[»] chr5 (2 HSPs)
chr5 (356-399)||(142610-142653)
chr5 (356-398)||(18058318-18058360)
[»] chr1 (2 HSPs)
chr1 (360-399)||(34041254-34041293)
chr1 (356-389)||(22522502-22522535)
[»] chr3 (2 HSPs)
chr3 (356-398)||(1318818-1318860)
chr3 (356-400)||(26149133-26149177)
[»] chr4 (1 HSPs)
chr4 (344-399)||(2750634-2750689)
[»] scaffold0003 (1 HSPs)
scaffold0003 (344-398)||(109825-109879)
[»] chr2 (1 HSPs)
chr2 (357-398)||(19178534-19178575)


Alignment Details
Target: chr6 (Bit Score: 822; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 16 - 973
Target Start/End: Original strand, 11407629 - 11408586
Alignment:
Q  16 acaaacagtcctctctaatgtgcacactgtcaattgctataatttactattcactcttcccatacctcaacccaatctgacacaaagtagtgtgatcaac 115  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  11407629 acaaacagtcctctttaatatgcacactgtcaattgctataatttactattcactcttcccatacctcaactcaatctaacacaaagaagtgtgatcaac 11407728  T
Q  116 caaatcatttaatttaatttgtttcttcccaacactccaaatccataaatttttaacattattcattccacactatttatttaatattattgttatcatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11407729 caaatcatttaatttaatttgtttcttcccaacactccaaatccataaatttttaacattattcattccacactatttatttaatattattgttatcatg 11407828  T
Q  216 tccaaaaatagcgatatgtattacattcctgctccagtacagttacattgaccttaatatcaacatcatgatatagatacatttaaatatttaacaacat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11407829 tccaaaaatagcgatatgtattacattcctgctccagtacagttacattgaccttaatatcaacatcatgatatagatacatttaaacatttaacaacat 11407928  T
Q  316 aaattattagttgtaagctacatactgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatcaatcacaacacaa 415  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11407929 aaattattagttgtaaacttcatactgtcaaattcaacgtcgaccaaccagtacccgtgcggatgcacgtgtatgttactagttatcaatcacaacacaa 11408028  T
Q  416 cccacaacacctgtaacaagcttgaaccctttcctatatatcccactcaatttccgtgttgctatatatataattcttcttctttcaaatcacattccca 515  Q
    ||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11408029 cccacaacacctgtaacaaacttgaaccctttcctttatatctcgctcaatttccgtgttgctatatatataattcttcttctttcaaatcacattccca 11408128  T
Q  516 ttgaatacttcattcttcaattcttgctcctcataactgattcacttctttctccctcactacccctcacaacaattctcaactgattcactacatcaca 615  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11408129 ttgaattcttcattcttcaattcttgctcctcataactgattcacttctttctccctcactatccctcacaacaattctcaactgattcactacatcaca 11408228  T
Q  616 atgaactcgattaggtttctgtttttctttgcaactctcgttgtggttgtggctggcgcagccacattcaacggtggagaattctttcgctttccatctt 715  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  11408229 atgaactcgattaggattctttttttctttgcaactctcgttgtggttgtggctggcacagccacattcaacggtggagaattctttctctttccatctt 11408328  T
Q  716 tcaagaacgaggataccctcggaaacaacaacattgcttacgaacttgttcatatgtcaagattcaattcggttattccagacgatggggaaatatacga 815  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  11408329 tcaagaacgaggataccctcggaaacaacaacattgcttccgaactcgttcatctgtcaagatccaattcggttattccagacgattgggaaatatacga 11408428  T
Q  816 agaacctgcttcaccgtctggagaattcccagttaatcttgatacttcctcccaaatccaccaccaccttcttcatcccgaaatccaccaccacctccac 915  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  11408429 agaacctgcttcaccgtccggcgaattcccagttaatcttgatacttcctcccaaatccatcaccaccttcttcatccccaaatccaccaccacctccac 11408528  T
Q  916 caattagctattagatatctcctacgcaacaaacacattctttaaccactgatgatgt 973  Q
    ||| ||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||    
T  11408529 caactagctatcagatatctcctacgcaacagacacattctttaactactgattatgt 11408586  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 19788107 - 19788169
Alignment:
Q  339 actgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttat 401  Q
    ||||||||| ||  || |||||||| |||||||||||||||||||||||||||||||||||||    
T  19788107 actgtcaaaatcgtccacgaccaacgagtacccgtgcggatgcacgggtatgttactagttat 19788169  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 5325828 - 5325873
Alignment:
Q  353 cctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  5325828 cctcgactaaccagtacccgtgcggatgcacgggtatgttactagt 5325873  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 30693033 - 30692993
Alignment:
Q  358 accaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  30693033 accaaccagtacccgtgcatatgcacgggtatgttactagt 30692993  T

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Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 34756002 - 34756050
Alignment:
Q  354 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756002 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatc 34756050  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 40444142 - 40444186
Alignment:
Q  354 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  40444142 ctcgaccaaccagtacctgtgcggatgcacgggtatgttactagt 40444186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 21649634 - 21649592
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21649634 cgaccaacgagtacccgtgcggatgcacgggtatgttactagt 21649592  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 31761936 - 31761895
Alignment:
Q  358 accaaccagtacccgtgcggatgcacgggtatgttactagtt 399  Q
    |||||||||||||| |||||| ||||| ||||||||||||||    
T  31761936 accaaccagtacccatgcggacgcacgagtatgttactagtt 31761895  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 17036754 - 17036808
Alignment:
Q  344 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 399  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  17036754 caaattcaccctcgaccaaccagtacccgtgcggatgcac-ggtatgttactagtt 17036808  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 14573909 - 14573968
Alignment:
Q  339 actgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    ||||||||| ||  || |||||||| ||||||||||||||||||||||||||||| ||||    
T  14573909 actgtcaaaatcgtccacgaccaacgagtacccgtgcggatgcacgggtatgttattagt 14573968  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 17035049 - 17035213
Alignment:
Q  18 aaacagtcctctctaatgtgcacactgtcaattgctataatttactattcactcttcccatacctcaacccaatctgacacaaagtagtgtgatcaacca 117  Q
    ||||| |||||| |||| | ||||||| |||||||||||||||||||||  |||||  |||||||||   |||| | |||||   |||  || |||||||    
T  17035049 aaacactcctctttaatatacacactgccaattgctataatttactattacctcttatcatacctcacatcaatttaacacatgctagcttgctcaacca 17035148  T
Q  118 aatcatttaatttaatttgtttcttcccaacactccaaatccataaatttttaacattattcatt 182  Q
    ||||||||||||  |||| |  ||||| | |||||  ||||| || |||| || |||||||||||    
T  17035149 aatcatttaattatatttctcacttccaaccactcttaatccctacatttataccattattcatt 17035213  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 142653 - 142610
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  142653 cgaccaaccagtacccgtgcggatgcacgggtattttactagtt 142610  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 18058360 - 18058318
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18058360 cgaccaaccagtacccgtgcggatgcacgggtattttactagt 18058318  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 34041293 - 34041254
Alignment:
Q  360 caaccagtacccgtgcggatgcacgggtatgttactagtt 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34041293 caaccagtacccgtgcggatgcacgggtatgttactagtt 34041254  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 22522502 - 22522535
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtat 389  Q
    ||||||||||||||||||||| ||||||||||||    
T  22522502 cgaccaaccagtacccgtgcgaatgcacgggtat 22522535  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 1318818 - 1318860
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  1318818 cgaccaaccaatacccgtgcggatgcacgggtatgttactagt 1318860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 26149133 - 26149177
Alignment:
Q  356 cgaccaaccagtacccgtgcggatgcacgggtatgttactagtta 400  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  26149133 cgaccaaccataacccgtgcggatgcacgggtatgttactagtta 26149177  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 2750689 - 2750634
Alignment:
Q  344 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 399  Q
    ||||||||  |||||| |||||||||||||||||||||||| || ||||| |||||    
T  2750689 caaattcactctcgactaaccagtacccgtgcggatgcacgagtttgttattagtt 2750634  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 109879 - 109825
Alignment:
Q  344 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    |||||||| |||| ||| || ||||| ||||||||||||||||| ||||||||||    
T  109879 caaattcaccctcaaccgactagtactcgtgcggatgcacgggtctgttactagt 109825  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 19178575 - 19178534
Alignment:
Q  357 gaccaaccagtacccgtgcggatgcacgggtatgttactagt 398  Q
    ||||||| |||||||||||||||||| |||||| ||||||||    
T  19178575 gaccaactagtacccgtgcggatgcatgggtatcttactagt 19178534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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