View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_11 (Length: 329)

Name: NF4128_low_11
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_11
NF4128_low_11
[»] chr4 (26 HSPs)
chr4 (18-318)||(40774157-40774458)
chr4 (98-194)||(14126118-14126214)
chr4 (99-194)||(26504306-26504401)
chr4 (148-194)||(3712516-3712562)
chr4 (137-194)||(35723391-35723449)
chr4 (137-191)||(35952627-35952681)
chr4 (137-194)||(13134445-13134502)
chr4 (137-194)||(40613445-40613502)
chr4 (149-193)||(36635331-36635375)
chr4 (87-186)||(19482613-19482712)
chr4 (135-193)||(10013897-10013955)
chr4 (135-193)||(10021038-10021096)
chr4 (150-192)||(22440609-22440651)
chr4 (148-194)||(33950142-33950188)
chr4 (149-191)||(49652982-49653024)
chr4 (150-191)||(903930-903971)
chr4 (141-194)||(999355-999408)
chr4 (149-190)||(7214533-7214574)
chr4 (138-191)||(7670680-7670733)
chr4 (142-187)||(56257933-56257978)
chr4 (150-194)||(5775365-5775409)
chr4 (148-188)||(8423731-8423771)
chr4 (137-193)||(15029760-15029816)
chr4 (150-194)||(18513248-18513292)
chr4 (150-194)||(19230316-19230360)
chr4 (150-194)||(44081584-44081628)
[»] chr6 (30 HSPs)
chr6 (87-194)||(7086740-7086847)
chr6 (87-187)||(8805586-8805686)
chr6 (87-194)||(32299220-32299327)
chr6 (148-194)||(30866151-30866197)
chr6 (86-194)||(7377929-7378031)
chr6 (137-194)||(9629378-9629435)
chr6 (137-194)||(19040347-19040404)
chr6 (137-194)||(21924942-21924999)
chr6 (137-194)||(26562684-26562741)
chr6 (137-194)||(33001296-33001353)
chr6 (142-194)||(9025501-9025553)
chr6 (150-194)||(9617442-9617486)
chr6 (87-186)||(426529-426628)
chr6 (87-186)||(1681703-1681802)
chr6 (139-190)||(7996389-7996440)
chr6 (139-190)||(8022361-8022412)
chr6 (87-186)||(9107385-9107484)
chr6 (115-194)||(9658852-9658931)
chr6 (137-233)||(20371074-20371174)
chr6 (148-194)||(7265600-7265646)
chr6 (137-194)||(30851597-30851652)
chr6 (131-194)||(6299501-6299564)
chr6 (131-194)||(6306311-6306374)
chr6 (87-194)||(7938061-7938168)
chr6 (87-194)||(9027123-9027230)
chr6 (87-194)||(10294052-10294159)
chr6 (91-164)||(25207713-25207786)
chr6 (148-193)||(32511674-32511719)
chr6 (154-194)||(11591877-11591917)
chr6 (141-193)||(17168893-17168945)
[»] chr7 (23 HSPs)
chr7 (110-194)||(19206018-19206102)
chr7 (87-194)||(17851376-17851483)
chr7 (84-193)||(5956215-5956324)
chr7 (140-194)||(24146814-24146868)
chr7 (87-194)||(26329389-26329496)
chr7 (137-194)||(32308115-32308172)
chr7 (150-194)||(3520349-3520393)
chr7 (88-232)||(21140951-21141095)
chr7 (118-186)||(30813788-30813856)
chr7 (139-194)||(5548673-5548728)
chr7 (140-194)||(9482932-9482986)
chr7 (148-194)||(20549797-20549843)
chr7 (137-187)||(29787383-29787433)
chr7 (148-194)||(42720897-42720943)
chr7 (137-194)||(2948678-2948735)
chr7 (137-194)||(22484020-22484077)
chr7 (149-194)||(22868049-22868094)
chr7 (118-194)||(7328698-7328774)
chr7 (150-194)||(8239057-8239101)
chr7 (150-194)||(12278843-12278887)
chr7 (135-191)||(23191889-23191945)
chr7 (150-194)||(27732246-27732290)
chr7 (150-194)||(38134413-38134457)
[»] chr8 (27 HSPs)
chr8 (117-194)||(27213522-27213599)
chr8 (137-194)||(31236584-31236641)
chr8 (113-194)||(11927093-11927174)
chr8 (141-194)||(12606836-12606889)
chr8 (86-193)||(11803203-11803310)
chr8 (87-194)||(24362209-24362316)
chr8 (137-194)||(13844603-13844660)
chr8 (144-194)||(3025553-3025603)
chr8 (156-194)||(18964191-18964229)
chr8 (148-194)||(34897091-34897137)
chr8 (117-186)||(4298901-4298970)
chr8 (113-194)||(11944636-11944717)
chr8 (150-194)||(4786345-4786389)
chr8 (142-193)||(14731712-14731763)
chr8 (95-186)||(22651929-22652020)
chr8 (137-192)||(39954288-39954343)
chr8 (150-196)||(8798836-8798882)
chr8 (148-194)||(20785472-20785518)
chr8 (156-194)||(28747442-28747480)
chr8 (87-193)||(36934615-36934721)
chr8 (150-191)||(3677794-3677835)
chr8 (117-194)||(12570515-12570592)
chr8 (149-194)||(14134706-14134751)
chr8 (150-191)||(34201056-34201097)
chr8 (90-194)||(7658411-7658515)
chr8 (150-194)||(12985400-12985444)
chr8 (139-187)||(24017452-24017500)
[»] chr2 (27 HSPs)
chr2 (88-193)||(21616708-21616813)
chr2 (87-194)||(18276466-18276573)
chr2 (118-194)||(10535766-10535842)
chr2 (117-187)||(21782832-21782902)
chr2 (137-194)||(896206-896263)
chr2 (137-194)||(18420441-18420498)
chr2 (149-192)||(2665897-2665940)
chr2 (111-194)||(24011006-24011088)
chr2 (139-194)||(37411251-37411306)
chr2 (117-187)||(4332901-4332971)
chr2 (156-194)||(20242734-20242772)
chr2 (148-194)||(23718032-23718078)
chr2 (148-194)||(24105704-24105750)
chr2 (140-182)||(27084260-27084302)
chr2 (137-191)||(28677904-28677958)
chr2 (137-187)||(31284043-31284093)
chr2 (148-194)||(31808083-31808129)
chr2 (148-194)||(34691812-34691858)
chr2 (148-194)||(34714224-34714270)
chr2 (148-194)||(44860326-44860372)
chr2 (149-194)||(5367199-5367244)
chr2 (149-194)||(30471045-30471090)
chr2 (150-194)||(18570980-18571024)
chr2 (150-194)||(30527602-30527646)
chr2 (150-194)||(35449521-35449565)
chr2 (150-194)||(39279683-39279727)
chr2 (150-194)||(44605146-44605190)
[»] chr3 (23 HSPs)
chr3 (95-194)||(25093455-25093554)
chr3 (142-190)||(9624641-9624689)
chr3 (156-194)||(13414483-13414521)
chr3 (156-194)||(35222952-35222990)
chr3 (137-194)||(8383252-8383309)
chr3 (142-187)||(11251978-11252023)
chr3 (140-193)||(11313808-11313861)
chr3 (151-194)||(8930837-8930880)
chr3 (135-194)||(9789111-9789170)
chr3 (87-194)||(34307787-34307894)
chr3 (135-193)||(3587341-3587399)
chr3 (137-183)||(5339103-5339149)
chr3 (148-194)||(7928456-7928502)
chr3 (148-194)||(8039842-8039888)
chr3 (199-233)||(27277780-27277814)
chr3 (148-194)||(38731224-38731270)
chr3 (148-194)||(49505161-49505207)
chr3 (137-186)||(28917996-28918045)
chr3 (149-194)||(29508451-29508496)
chr3 (137-194)||(48202276-48202333)
chr3 (145-193)||(23184080-23184128)
chr3 (150-194)||(32804547-32804591)
chr3 (150-194)||(40150578-40150622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (120-194)||(135319-135393)
[»] chr1 (39 HSPs)
chr1 (87-231)||(398735-398879)
chr1 (87-194)||(7918218-7918325)
chr1 (87-194)||(10577742-10577849)
chr1 (87-186)||(41877485-41877584)
chr1 (148-193)||(6427356-6427401)
chr1 (87-188)||(34298381-34298482)
chr1 (118-194)||(1864887-1864962)
chr1 (137-193)||(13436453-13436509)
chr1 (87-194)||(1486716-1486823)
chr1 (87-186)||(47989443-47989541)
chr1 (89-194)||(9709767-9709872)
chr1 (135-192)||(19324555-19324612)
chr1 (137-194)||(36878456-36878513)
chr1 (137-194)||(39953153-39953210)
chr1 (142-191)||(40181871-40181920)
chr1 (86-189)||(16927197-16927298)
chr1 (87-194)||(17831538-17831639)
chr1 (137-193)||(19562629-19562685)
chr1 (141-189)||(28460767-28460815)
chr1 (94-194)||(38503272-38503372)
chr1 (137-192)||(12443469-12443524)
chr1 (150-193)||(17425101-17425144)
chr1 (135-194)||(32724105-32724164)
chr1 (139-193)||(25098563-25098617)
chr1 (152-194)||(25361896-25361938)
chr1 (156-194)||(30749854-30749892)
chr1 (156-194)||(30771305-30771343)
chr1 (152-194)||(44482240-44482282)
chr1 (137-186)||(1262879-1262928)
chr1 (150-187)||(2288181-2288218)
chr1 (117-186)||(5376515-5376584)
chr1 (149-194)||(10233260-10233305)
chr1 (137-194)||(29163388-29163445)
chr1 (150-194)||(16164322-16164366)
chr1 (134-190)||(22781434-22781490)
chr1 (142-194)||(30847727-30847779)
chr1 (150-194)||(39130774-39130818)
chr1 (150-194)||(40747780-40747824)
chr1 (150-194)||(52903257-52903301)
[»] scaffold0007 (1 HSPs)
scaffold0007 (87-194)||(225275-225382)
[»] chr5 (28 HSPs)
chr5 (98-194)||(16203802-16203898)
chr5 (147-194)||(23012415-23012462)
chr5 (148-193)||(6471897-6471942)
chr5 (150-194)||(17925179-17925223)
chr5 (150-194)||(32630742-32630786)
chr5 (142-194)||(41091264-41091316)
chr5 (139-194)||(3966500-3966555)
chr5 (87-194)||(6401443-6401550)
chr5 (87-186)||(17177038-17177137)
chr5 (87-186)||(21522695-21522794)
chr5 (87-186)||(21533261-21533360)
chr5 (140-194)||(12927652-12927706)
chr5 (87-193)||(15410456-15410562)
chr5 (150-188)||(30098334-30098372)
chr5 (148-194)||(30502395-30502441)
chr5 (148-194)||(30542738-30542784)
chr5 (156-194)||(39758286-39758324)
chr5 (157-191)||(42029767-42029801)
chr5 (137-186)||(8420022-8420071)
chr5 (139-192)||(18592070-18592123)
chr5 (137-194)||(27144458-27144515)
chr5 (137-186)||(31084318-31084367)
chr5 (148-193)||(32766951-32766996)
chr5 (150-194)||(9449477-9449521)
chr5 (142-194)||(18421848-18421900)
chr5 (126-194)||(18607104-18607172)
chr5 (113-193)||(19293431-19293511)
chr5 (141-193)||(39205879-39205931)
[»] scaffold0116 (1 HSPs)
scaffold0116 (87-194)||(9843-9950)
[»] scaffold0022 (2 HSPs)
scaffold0022 (150-193)||(99901-99944)
scaffold0022 (150-194)||(90851-90895)
[»] scaffold0110 (1 HSPs)
scaffold0110 (137-194)||(28845-28902)
[»] scaffold0652 (1 HSPs)
scaffold0652 (88-186)||(477-575)
[»] scaffold0475 (1 HSPs)
scaffold0475 (88-166)||(3262-3340)
[»] scaffold0123 (1 HSPs)
scaffold0123 (148-194)||(44532-44578)
[»] scaffold0085 (1 HSPs)
scaffold0085 (149-194)||(26400-26445)
[»] scaffold0036 (1 HSPs)
scaffold0036 (149-194)||(9754-9799)
[»] scaffold0376 (1 HSPs)
scaffold0376 (142-194)||(6312-6364)
[»] scaffold0011 (1 HSPs)
scaffold0011 (150-194)||(240028-240072)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 40774157 - 40774458
Alignment:
Q  18 aataggatctacaacatgcttgattagaatcatttatatcaatacttatctgaaataatagttcggatttatgaaacacggatacagacacagataccag 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||| ||||||||    
T  40774157 aatagaatctacaacatgcttgattagaatcatttatatcaatacttatctgaaatgatagattggatctatgaaacacggatacagacacggataccag 40774256  T
Q  118 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtccggaacatgtctaatccgagtag 217  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40774257 acacgacacatataccaatacgccgactttgctaataattttataaaatcagataattcaatgtaattatatgtgtccggaacacgtctaatccgagtag 40774356  T
Q  218 tgtatgtgcttcataggataggattggatccgttaataacttaatattgatcacttatctgaagtac-aagaggtttcaagcagtgtagtaaaactgttc 316  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40774357 tgtatgtgcttcataggataggattggatccgttaataacttgatattgatcacttatctgaagtactaagaggtttcaagcagtgtagtaaaactgttc 40774456  T
Q  317 tt 318  Q
    ||    
T  40774457 tt 40774458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 14126214 - 14126118
Alignment:
Q  98 gatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||||| |   ||||||||||||| || || ||||||||| || ||||||||| | ||| ||| |||||||| |||||||||| |||||    
T  14126214 gatacagacacagacagtggacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataagtgtc 14126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 26504401 - 26504306
Alignment:
Q  99 atacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||||| || | ||||| || ||  | ||  ||||| |||||||||||| ||||||||| ||| |||| ||||||||||||||||    
T  26504401 atacagacacagataccggatatgacacggacactgaaacatcgacactgctaataatttaagaaaatcaaatagttcagtgtaattatatgtgtc 26504306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 3712562 - 3712516
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  3712562 gctaataatttgagaaaatcatgtaattcaatgtaattatatgtgtc 3712516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 35723449 - 35723391
Alignment:
Q  137 acgccgacattgctaataattttagaaaat-cagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||    
T  35723449 acgccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtc 35723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 35952681 - 35952627
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||||| || |||||||||||| | ||||||| ||||||||||||||||||||||    
T  35952681 acgccgccactgctaataatttgataaaatcatataattcaatgtaattatatgt 35952627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 13134445 - 13134502
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||| ||||||| ||||||||| |||||| | ||||||||||||||||    
T  13134445 acgccgacactgcttataatttaagaaaatcacataatttagtgtaattatatgtgtc 13134502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 40613445 - 40613502
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||| ||| ||||||||| |||||||| ||||||||||||||||    
T  40613445 acgccgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgtc 40613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 36635331 - 36635375
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||    
T  36635331 ctaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 19482613 - 19482712
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| |||||||||  ||||||| ||||||||||||||||| ||  | |||||||||   |||||||||| | || |||| |||||||  ||||||||    
T  19482613 tatgaagcacggatacgaacacagacaccagacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatta 19482712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 10013897 - 10013955
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  10013897 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 10013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 10021038 - 10021096
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  10021038 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 10021096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 22440651 - 22440609
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||    
T  22440651 taataatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 33950142 - 33950188
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||| |||||| |||||||| |||||||||    
T  33950142 gctaataatttgagaaaatcacataatttaatgtaatcatatgtgtc 33950188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 49653024 - 49652982
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  49653024 ctaataatttaagaaaatcagataattcagtataattatatgt 49652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 903930 - 903971
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    ||||||||| ||||||||| |||||||| |||||||||||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 999408 - 999355
Alignment:
Q  141 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||| ||||||||||| || |||||| |||||| | ||||||||||||||||    
T  999408 cgacatcgctaataatttgagtaaatcatataatttagtgtaattatatgtgtc 999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 7214574 - 7214533
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatg 190  Q
    |||||||||| ||||||||| |||||| ||||||||||||||    
T  7214574 ctaataatttgagaaaatcacataatttaatgtaattatatg 7214533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 7670680 - 7670733
Alignment:
Q  138 cgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    ||||||||||||||||| ||| ||||||||| |||||||| | ||| |||||||    
T  7670680 cgccgacattgctaatagtttgagaaaatcacataattcagtataactatatgt 7670733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 56257933 - 56257978
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    |||| |||||||||||| ||||||||| |||||||| |||||||||    
T  56257933 gacactgctaataatttgagaaaatcatataattcagtgtaattat 56257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 5775409 - 5775365
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgtc 5775365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 8423771 - 8423731
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattata 188  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  8423771 gctaataatttgagaaaatcacataattcagtgtaattata 8423731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 15029760 - 15029816
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||| |||| |||||||||||| | || |||| |||||||| |||||||||||||||    
T  15029760 acgcagacactgctaataatttgaaaatatcacataattcagtgtaattatatgtgt 15029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 18513292 - 18513248
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 19230360 - 19230316
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||||||| |||||    
T  19230360 taataatttgagaaaataacataattcaatgtaattataggtgtc 19230316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 44081628 - 44081584
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  44081628 taataatttgaaaaaatcatataatttaatgtaattatatgtgtc 44081584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 7086740 - 7086847
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || ||||||| ||||| ||||||||||||||||||| ||| | ||| || || |||||||||||| ||||||||| |||||| | ||||||||    
T  7086740 tatgaagcatggatacaaacacaaataccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 7086839  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  7086840 tatgtgtc 7086847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 8805686 - 8805586
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || ||||||| ||||| | ||||||||||||||||| ||| | ||| || || |||||||||||| ||||||||| |||||| | ||||||||    
T  8805686 tatgaagcatggatacatacacaaacaccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaatta 8805587  T
Q  187 t 187  Q
    |    
T  8805586 t 8805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 32299220 - 32299327
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| |||||||||||||||||| ||||||||  ||||| ||||  | || || ||  || ||||||||| ||||||||| ||||||||||||| |||    
T  32299220 tatgaagcacggatacagacacagacaccagacataacacaaatactgacacaccaaccctgataataatttgagaaaatcacataattcaatgtagtta 32299319  T
Q  187 tatgtgtc 194  Q
    || |||||    
T  32299320 tacgtgtc 32299327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 30866197 - 30866151
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  30866197 gctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 7377929 - 7378031
Alignment:
Q  86 ttatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatt 185  Q
    ||||||| ||||||||| ||| |||| ||| ||||| ||||||| |||      ||||||  ||||| ||||| ||||||||| ||||||||||||||||    
T  7377929 ttatgaagcacggatacggacccagacaccggacacaacacagacacc------ccgacaccgctaaaaatttgagaaaatcacataattcaatgtaatt 7378022  T
Q  186 atatgtgtc 194  Q
    |||||||||    
T  7378023 atatgtgtc 7378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 9629378 - 9629435
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  || |||||||| ||||||||| |||||||||||||||||||||||||    
T  9629378 acgccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtc 9629435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 19040347 - 19040404
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  19040347 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 19040404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 21924999 - 21924942
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  21924999 acgccgacactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtc 21924942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 26562684 - 26562741
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  26562684 acgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtc 26562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 33001353 - 33001296
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||||||| | ||||||| |||||| ||||||||||||||||||    
T  33001353 acgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtc 33001296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 9025553 - 9025501
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| |||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 9025501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 9617442 - 9617486
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 9617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 426628 - 426529
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || |||||||||||| |||||| |||||||||| || ||  | |||||||||  | ||||||||| | ||||||| |||||| ||||||||||    
T  426628 tatgaagcatggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaatta 426529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 1681703 - 1681802
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| |||||||||||||||||| |||  |||||||||| | || || |||||||||   |||||||||| | |||||||  ||||||| ||||||||    
T  1681703 tatgaagcacggatacagacacagacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaatta 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 7996440 - 7996389
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 190  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||||    
T  7996440 gccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 7996389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 8022361 - 8022412
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 190  Q
    ||||||| |||||||||||| ||||||||| |||||||| ||||||||||||    
T  8022361 gccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 8022412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 9107484 - 9107385
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| || ||| |||||||||| || || || |||||||||  ||||||||||| | ||||||| | |||||| ||||||||    
T  9107484 tatgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatta 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 9658852 - 9658931
Alignment:
Q  115 cagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||| || ||  | |||||||||  ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  9658852 cagacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtc 9658931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 20371174 - 20371074
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtccg----gaacatgtctaatccgagtagtgtatgtgcttcata 232  Q
    |||||||||  ||||||||||| ||||||||| |||| ||||||| |||||||||||| |    ||||| | |||||||||| ||||| ||| |||||||    
T  20371174 acgccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaacaagcctaatccgaggagtgtctgttcttcata 20371075  T
Q  233 g 233  Q
    |    
T  20371074 g 20371074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 7265646 - 7265600
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  7265646 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 7265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 30851597 - 30851652
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||||||| ||||||||  | |||||||||||||||||||||||    
T  30851597 acgccgacactgctaataatttaagaaaatc--acaattcaatgtaattatatgtgtc 30851652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 6299501 - 6299564
Alignment:
Q  131 accaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| |||||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  6299501 accaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6299564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 6306311 - 6306374
Alignment:
Q  131 accaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| |||||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  6306311 accaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtc 6306374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 7938061 - 7938168
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| || ||| |||||||||  || ||  | |||||||||  ||||||||||| | ||||||| |||||| | ||||||||    
T  7938061 tatgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 7938160  T
Q  187 tatgtgtc 194  Q
    || |||||    
T  7938161 taagtgtc 7938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 9027123 - 9027230
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||| ||||| ||||| ||  || |||||||||| || ||  | |||||||||  ||||||||||| ||| ||||| |||||||  ||||||||    
T  9027123 tatgaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaatta 9027222  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  9027223 tatgtgtc 9027230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 10294052 - 10294159
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| |||||  | ||| |||||||||| |||||  | | ||||| |  ||||||||||| ||| ||||  ||| |||||||||||||    
T  10294052 tatgaagcacggatacggacacgaacaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaatta 10294151  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  10294152 tatgtgtc 10294159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 25207713 - 25207786
Alignment:
Q  91 aaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaa 164  Q
    |||||||||||||||||  |||| ||||||| | ||  | |||||||||||||||  ||||||||||| |||||    
T  25207713 aaacacggatacagacaaggatatcagacacaaaacgaacaccaatacgccgacaccgctaataatttgagaaa 25207786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 32511719 - 32511674
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  32511719 gctaataatttaagaaaatcacataattcagtgtaattataagtgt 32511674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 11591917 - 11591877
Alignment:
Q  154 aattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgtc 11591877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 17168893 - 17168945
Alignment:
Q  141 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||||||| ||||||||| | ||||| | |||||||||||||| |||||||||    
T  17168893 cgacattgataataatttgaaaaaatgacataattcaatgtaactatatgtgt 17168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 19206018 - 19206102
Alignment:
Q  110 gataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||||| || ||||| |||||||||  ||||||||||| ||||||||| |||||||| | ||||||||||||||    
T  19206018 gataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtc 19206102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 17851376 - 17851483
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||||||||| || ||| |||||||||  |||||| | ||  ||| |  ||||||||||||||||||||| |||||||| ||||||||    
T  17851376 tatgaagcacggatacagacacggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaatta 17851475  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  17851476 tatgtgtc 17851483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 5956215 - 5956324
Alignment:
Q  84 atttatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaa 183  Q
    ||||||||| || ||||||||||| ||||| |||||||||||  |||||  | ||||||| | | |||||||||| | ||||||| |||||| |||||||    
T  5956215 atttatgaagcatggatacagacatagataacagacacgacatggatactgacacgccgatactcctaataatttaaaaaaatcaaataatttaatgtaa 5956314  T
Q  184 ttatatgtgt 193  Q
    ||||||||||    
T  5956315 ttatatgtgt 5956324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 24146814 - 24146868
Alignment:
Q  140 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  24146814 ccgacaatgctaataattttagaaaatcacataattcaatataattatatgtgtc 24146868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 26329496 - 26329389
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| |||| |||||||||| || ||  ||||||||||||| ||  | |||||||||| | ||||||||| |||||| || | |||||| ||||||||    
T  26329496 tatgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaatta 26329397  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  26329396 tatgtgtc 26329389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 32308115 - 32308172
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||| ||||||||    
T  32308115 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtc 32308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 3520393 - 3520349
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||    
T  3520393 taatcatttgagaaaatcatataattcaatgtaattatatgtgtc 3520349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 21141095 - 21140951
Alignment:
Q  88 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||| ||||||||| ||||| || |||  ||||||||| ||  || | ||| |||||   |||||||||| ||||||||| |||||||| ||| |||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagtgtgattat 21140996  T
Q  188 atgtgtccggaacatgtctaatccgagtagtgtatgtgcttcata 232  Q
    | ||||| |   | |||||||||| || ||||| |||||||||||    
T  21140995 aggtgtcggagtcgtgtctaatccaagaagtgtttgtgcttcata 21140951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 30813788 - 30813856
Alignment:
Q  118 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||| ||  |||| ||||||||||||||||||| ||||||| | |||||||| ||||||||    
T  30813788 acacgagacagacactgatactccgacattgctaataatttgagaaaattacataattcagtgtaatta 30813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 5548673 - 5548728
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||  ||| ||||||| ||||||||| |||||||| ||||||||||||||||    
T  5548673 gccgacaccgctgataatttgagaaaatcaaataattcagtgtaattatatgtgtc 5548728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 9482932 - 9482986
Alignment:
Q  140 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| ||| ||||||| ||||||||| | |||||| ||||||||||||||||    
T  9482932 ccgacatcgctgataatttgagaaaatcacacaattcagtgtaattatatgtgtc 9482986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 20549797 - 20549843
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  20549797 gctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtc 20549843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 29787433 - 29787383
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||    
T  29787433 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 42720943 - 42720897
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||||||    
T  42720943 gctaataatttgaaaaaatcacataattaaatgtaattatatgtgtc 42720897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 2948678 - 2948735
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||| |||||||||||||||||  ||||| | ||||||||||||||||    
T  2948678 acgccgacaccgctgataattttagaaaatcacgtaatttagtgtaattatatgtgtc 2948735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 22484020 - 22484077
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  |||||||||||||||||||   |||||||| | ||||||||||||||    
T  22484020 acgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtc 22484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 22868049 - 22868094
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||| | ||||||||| |||||||| ||||||||||||||||    
T  22868049 ctaataatatgagaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 7328774 - 7328698
Alignment:
Q  118 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||| |  || ||| ||| | |||||||||||| ||||||| | |||||| | ||||||||||||||||    
T  7328774 acacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtc 7328698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 8239101 - 8239057
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||||    
T  8239101 taataatttaagaaaatcttataattcagtgtaattatatgtgtc 8239057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 12278843 - 12278887
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||    
T  12278843 taataatttaagaaaatgacataattcagtgtaattatatgtgtc 12278887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 23191889 - 23191945
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||||||||||  ||||||||||| ||||||||| ||| |||| |||||||| ||||    
T  23191889 atacgccgacaccgctaataatttgagaaaatcacatatttcagtgtaattacatgt 23191945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 27732290 - 27732246
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||    
T  27732290 taataatttaagaaaattacataattcagtgtaattatatgtgtc 27732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 38134457 - 38134413
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  38134457 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 38134413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 27213522 - 27213599
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| |||||  | ||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  27213522 gacacgacacggatacagacacgccgacactgctaataatttcagaaaatcacataattcactgtaattatatgtgtc 27213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 31236641 - 31236584
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31236641 acgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 31236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 11927174 - 11927093
Alignment:
Q  113 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| ||||||||| ||| | |||||||||||| || ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  11927174 accaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtc 11927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 12606889 - 12606836
Alignment:
Q  141 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12606889 cgacactgctaataatttgagaaaatcatataattcaatgtaattatatgtgtc 12606836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 11803203 - 11803310
Alignment:
Q  86 ttatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatt 185  Q
    |||||||||||| ||||||||||  | |||| |||||||||  | ||  |||| | |||| || ||||||||| ||||||||| |||||||| |||||||    
T  11803203 ttatgaaacacgaatacagacacgaacaccaaacacgacacgaacactgatacactgacactgttaataatttaagaaaatcacataattcagtgtaatt 11803302  T
Q  186 atatgtgt 193  Q
    ||||||||    
T  11803303 atatgtgt 11803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 24362316 - 24362209
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||| ||||| || || || ||| || |||||||||| ||| | |||||||||  ||||||||||| ||| ||||| |||||||| ||||||||    
T  24362316 tatgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaatta 24362217  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  24362216 tatgtgtc 24362209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 13844660 - 13844603
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  13844660 acgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtc 13844603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 3025553 - 3025603
Alignment:
Q  144 cattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  3025553 cattgctaataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 18964191 - 18964229
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18964191 ttttagaaaatcacataattcaatgtaattatatgtgtc 18964229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 34897091 - 34897137
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  34897091 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtc 34897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 4298970 - 4298901
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||||||||| || |||||||||  | ||||||||| | ||||||| |||||| ||||||||||    
T  4298970 gacacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaatta 4298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 11944636 - 11944717
Alignment:
Q  113 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| ||||||||| ||| | || ||||||||| || ||||||||| | ||||||| |||| ||| ||||||||||||||||    
T  11944636 accaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgtc 11944717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 4786389 - 4786345
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtc 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 14731712 - 14731763
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||| |||||||||||| ||||||||| |||||| | |||||||||||||||    
T  14731712 gacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 22651929 - 22652020
Alignment:
Q  95 acggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||| ||||| || ||| |||||||||| || ||  | |||||||||  ||||||||||| | ||||||| |||||||||| ||||||    
T  22651929 acggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataatta 22652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 39954343 - 39954288
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    |||||||||  ||||||||||| ||||||||| |||||| | ||||||||||||||    
T  39954343 acgccgacaccgctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 8798882 - 8798836
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtccg 196  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataattatatgtgtccg 8798836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 20785518 - 20785472
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||||    
T  20785518 gctaataatttgaggaaatcacataatttaatgtaattatatgtgtc 20785472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 28747480 - 28747442
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28747480 ttttagaaaatcagatagctcaatgtaattatatgtgtc 28747442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 36934615 - 36934721
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || |||||| || ||| | |||| ||||||||| || || || ||| |||||  ||||||||||  | ||||||| |||||||| ||||||||    
T  36934615 tatgaagcatggatacggatacaaacaccaaacacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaatta 36934714  T
Q  187 tatgtgt 193  Q
    |||||||    
T  36934715 tatgtgt 36934721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 3677794 - 3677835
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||    
T  3677794 taataattttaaaaaatcacataattctatgtaattatatgt 3677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 12570592 - 12570515
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| ||||| ||| | |||  |||| |||||||||||| |||||| || |||||| | ||||||||||||||||    
T  12570592 gacacgatacagacaccgacacgttgacactgctaataatttaagaaaaacacataattaagtgtaattatatgtgtc 12570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 14134706 - 14134751
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatatatgtc 14134751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 34201097 - 34201056
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  34201097 taataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 7658411 - 7658515
Alignment:
Q  90 gaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatat 189  Q
    |||||||| |||| ||||| || | | || || ||||||| | | |||||||||||   |||||||||| ||||||| | |||||||| |||||||||||    
T  7658411 gaaacacgaatacggacacggacatcggatacaacacagacatcgatacgccgacaccactaataatttgagaaaattacataattcagtgtaattatat 7658510  T
Q  190 gtgtc 194  Q
     ||||    
T  7658511 ttgtc 7658515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 12985400 - 12985444
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| ||||||||||||||| |||| ||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtc 12985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 24017500 - 24017452
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||||||  |||||||||| ||| ||||| ||||||||||||||||||    
T  24017500 gccgacatcactaataatttgagacaatcatataattcaatgtaattat 24017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 21616708 - 21616813
Alignment:
Q  88 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||| ||||||||| |||||||| ||  |||||||||| || ||  | |||||||||  ||||||||||| ||||||||| |||||||| |||||||||    
T  21616708 atgaagcacggatacggacacagacacatgacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T
Q  188 atgtgt 193  Q
    ||||||    
T  21616808 atgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 18276466 - 18276573
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||||||||| || ||| ||||||| ||||| ||  ||| |||||||  ||||||||||| |||||||||  ||||||| ||||||||    
T  18276466 tatgaagcacggatacagacacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaatta 18276565  T
Q  187 tatgtgtc 194  Q
    | ||||||    
T  18276566 tgtgtgtc 18276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 10535842 - 10535766
Alignment:
Q  118 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||| ||||||||||||  | ||||||||| ||||||| | |||||||| |||||| ||| |||||    
T  10535842 acacgacacagatactaatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtc 10535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 21782902 - 21782832
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||||||||| | ||  | ||||||||| |||||||||||| ||||||||| |||||||| |||||||||    
T  21782902 gacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 896206 - 896263
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| |||||||| ||| ||||||||| ||| ||||||||||| |||||||||    
T  896206 acgccgacactgctaatagtttgagaaaatcacatatttcaatgtaatcatatgtgtc 896263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 18420498 - 18420441
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| ||| |||||||||||| ||||||||| ||||||||||| ||||||| |||||    
T  18420498 acgccaacactgctaataatttgagaaaatcacataattcaatgcaattataagtgtc 18420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 2665940 - 2665897
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    |||||||||||||||||||| |||||| | ||||||||||||||    
T  2665940 ctaataattttagaaaatcacataatttagtgtaattatatgtg 2665897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 24011006 - 24011088
Alignment:
Q  111 ataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||||||| | |||||| | |||||| ||| |||||    
T  24011006 ataccggacacgacacaaacaccaa-acgccgacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtc 24011088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 37411306 - 37411251
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||  ||||||||||| ||||||||| |||||||| ||| ||||||||||||    
T  37411306 gccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtc 37411251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 4332901 - 4332971
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    |||||| |||||||||  | | ||||||| || |||||||||  |||||||| ||||||||||||||||||    
T  4332901 gacacggcacagatacttacatgccgacactgataataatttgggaaaatcacataattcaatgtaattat 4332971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 20242772 - 20242734
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  20242772 ttttagaaaatcacataattcagtgtaattatatgtgtc 20242734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 23718032 - 23718078
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  23718032 gctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 23718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 24105704 - 24105750
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  24105704 gctaataatttgagaaagtcacataattcagtgtaattatatgtgtc 24105750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 27084260 - 27084302
Alignment:
Q  140 ccgacattgctaataattttagaaaatcagataattcaatgta 182  Q
    |||||| |||||||||||| ||||||||| |||||||||||||    
T  27084260 ccgacactgctaataatttgagaaaatcatataattcaatgta 27084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 28677904 - 28677958
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||||||||  ||||||||||| | ||||||| |||||||| |||||||||||||    
T  28677904 acgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 31284043 - 31284093
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||||||| |||||||||||| ||||||||| ||||| || |||||||||    
T  31284043 acgccgacactgctaataatttgagaaaatcacataatccattgtaattat 31284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 31808083 - 31808129
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  31808083 gctaataatttaacaaaatcacataattcagtgtaattatatgtgtc 31808129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 34691858 - 34691812
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  34691858 gctaataatttgataaaatcatataattcagtgtaattatatgtgtc 34691812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 34714270 - 34714224
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  34714270 gctaataatttgataaaatcatataattcagtgtaattatatgtgtc 34714224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 44860326 - 44860372
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  44860326 gctaataatttgagaaaatcgcataattcagtgtaattatatgtgtc 44860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 5367199 - 5367244
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| || |||||| |||||||| ||||||||||||||||    
T  5367199 ctaataatttgaggaaatcacataattcagtgtaattatatgtgtc 5367244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 30471045 - 30471090
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  30471045 ctaatattttgagaaaatcacataattcgatgtaattatatgtgtc 30471090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 18570980 - 18571024
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 30527646 - 30527602
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  30527646 taataatttgagaaaatcatataatttagtgtaattatatgtgtc 30527602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 35449521 - 35449565
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| | |||||| ||||||||||||||||    
T  35449521 taataatttgagaaaatcacagaattcagtgtaattatatgtgtc 35449565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 39279683 - 39279727
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| | ||||||||| |||||||| ||||||||||||||||    
T  39279683 taataatatgagaaaatcaaataattcagtgtaattatatgtgtc 39279727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 44605190 - 44605146
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgtc 44605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 25093455 - 25093554
Alignment:
Q  95 acggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| ||| |||||||||| || || || ||||||||| || |||| |||| ||||||||| | |||||| ||||||||||||||||    
T  25093455 acggatacaaacacagacaccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtc 25093554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 9624641 - 9624689
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatg 190  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||    
T  9624641 gacactgctaataatttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 13414483 - 13414521
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13414483 ttttagaaaatcaaataattcaatgtaattatatgtgtc 13414521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 35222952 - 35222990
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35222952 ttttagaaaatcacataattcaatgtaattatatgtgtc 35222990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 8383252 - 8383309
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  8383252 acgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtc 8383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 11251978 - 11252023
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||    
T  11251978 gacattgctaataatttgagaaaatcacataattcagtgtaattat 11252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 11313861 - 11313808
Alignment:
Q  140 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||||| |||||||||||| ||||||||| |||||| | |||||||||||||||    
T  11313861 ccgacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgt 11313808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 8930880 - 8930837
Alignment:
Q  151 aataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||    
T  8930880 aataattttaaaaaatcacataattcgatgtaattatatgtgtc 8930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 9789111 - 9789170
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| ||||||||||||||||||    
T  9789111 atacgtcgaaattgataataattttataaaataatataatttaatgtaattatatgtgtc 9789170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 34307894 - 34307787
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || |||||| |||||  | ||| |||| |||||||| || || |||| ||||  ||||||||||| ||||||||| ||| |||| ||||||||    
T  34307894 tatgaagcatggatacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaatta 34307795  T
Q  187 tatgtgtc 194  Q
    || |||||    
T  34307794 taagtgtc 34307787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 3587399 - 3587341
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||| ||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  3587399 atacgtcgaaattgataataattttacaaaataatataatttaatgtaattatatgtgt 3587341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 5339103 - 5339149
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaa 183  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||    
T  5339103 acgccgacattgttaataatttgagaaaatcacataatttaatgtaa 5339149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 7928456 - 7928502
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  7928456 gctaataatttgaaaaaatcacataattcagtgtaattatatgtgtc 7928502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 8039888 - 8039842
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||||||    
T  8039888 gctaataatttgagaaaattatataattcagtgtaattatatgtgtc 8039842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 27277814 - 27277780
Alignment:
Q  199 acatgtctaatccgagtagtgtatgtgcttcatag 233  Q
    |||||||||||||||| ||||||||||||||||||    
T  27277814 acatgtctaatccgaggagtgtatgtgcttcatag 27277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 38731224 - 38731270
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| ||||||| |||||||| |||| |||||||||||    
T  38731224 gctaataattttaaaaaatcacataattcagtgtagttatatgtgtc 38731270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 49505207 - 49505161
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  49505207 gctaataatttgagaaaatcacataatttagtgtaattatatgtgtc 49505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 28917996 - 28918045
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||| ||||||||||| | ||||||| |||||||| ||||||||    
T  28917996 acgccgacatagctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 29508451 - 29508496
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| | ||||||| |||||||| ||||||||||||||||    
T  29508451 ctaataatttgaaaaaatcatataattcagtgtaattatatgtgtc 29508496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 48202333 - 48202276
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||   ||||| ||| ||||||||| |||||| ||||||||||||||||||    
T  48202333 acgccgacatccataatagtttgagaaaatcacataatttaatgtaattatatgtgtc 48202276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 23184128 - 23184080
Alignment:
Q  145 attgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||| ||||||||| | ||||||| ||||||| ||||||||||||||||    
T  23184128 attgataataatttgacaaaatcatataattctatgtaattatatgtgt 23184080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 32804591 - 32804547
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||| | ||||||||||||||||    
T  32804591 taataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 40150622 - 40150578
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  40150622 taataatttgagaaaatgatataattcaatgtaatcatatgtgtc 40150578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 135393 - 135319
Alignment:
Q  120 acgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| ||||| || |||||| |||||||||||| ||||||||| |||||||  ||||||||||||||||    
T  135393 acgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtc 135319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 398879 - 398735
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||| | || ||| |||||||||| || ||  | |||||||||  ||||||||||| | ||||||| |||||||| ||||||||    
T  398879 tatgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T
Q  187 tatgtgtccggaacatgtctaatccgagtagtgtatgtgcttcat 231  Q
    || |||||||| ||| | ||||||  || |||||  |||||||||    
T  398779 taggtgtccgggacacgcctaatctaagaagtgtccgtgcttcat 398735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 7918325 - 7918218
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||| ||||||||  || ||| ||||||||||||| |   | |||| |||||  |||||||||| ||||||||| |||||||| ||||||||    
T  7918325 tatgaagcacggttacagacatggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcagtgtaatta 7918226  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  7918225 tatgtgtc 7918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 10577849 - 10577742
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| || ||| |||||||||| || ||| | |||||||||  ||||||  ||||||||||||| | ||| || ||||||||    
T  10577849 tatgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaatta 10577750  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  10577749 tatgtgtc 10577742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 41877584 - 41877485
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||  |||||||||||||||||||| ||   ||||||||||  ||||||||||| ||||||| | |||||| | ||||||||    
T  41877584 tatgaagcacggatacggacatggataccagacacgacacagacactggtacgccgacaccgctaataatttgagaaaattacataatttagtgtaatta 41877485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 6427356 - 6427401
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6427356 gctaataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 34298381 - 34298482
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||| |||||||||||  | |||||||||||||| || ||  | || ||||||   |||||||||| ||||||||| |||||||| ||||||||    
T  34298381 tatgaaacaccgatacagacacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaatta 34298480  T
Q  187 ta 188  Q
    ||    
T  34298481 ta 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 1864962 - 1864887
Alignment:
Q  118 acacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||| | ||| ||||||  | ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  1864962 acacgacacagatacta-tacaccgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtc 1864887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 13436453 - 13436509
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||| |||||||||||| || |||||| |||||||| |||||||||||||||    
T  13436453 acgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgt 13436509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 1486823 - 1486716
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || |||||| ||||| |||||| || ||||||| |||||  | |||| ||||  ||||||||||| | ||||||| |||||||| ||||||||    
T  1486823 tatgaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 1486724  T
Q  187 tatgtgtc 194  Q
    || |||||    
T  1486723 taagtgtc 1486716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 47989443 - 47989541
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| || |||||||||||| |||||||||||||||||||| ||  | |||||||||    ||||||||| | ||||||| |||||||| ||||||||    
T  47989443 tatgaagcatggatacagacacggataccagacacgacacagacactgacacgccgaca-caataataatttaaaaaaatcacataattcagtgtaatta 47989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 9709767 - 9709872
Alignment:
Q  89 tgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattata 188  Q
    |||| ||||||||||||||  || | |||||||||||| || ||  | | ||| |||  ||||||||||| ||||||||| |||||||  ||||||||||    
T  9709767 tgaagcacggatacagacatggacatcagacacgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattcgttgtaattata 9709866  T
Q  189 tgtgtc 194  Q
    ||||||    
T  9709867 tgtgtc 9709872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 19324555 - 19324612
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    ||||| ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  19324555 atacgtcgacactgctgataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 36878456 - 36878513
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  36878456 acgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtc 36878513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 39953210 - 39953153
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||||||||||||| |||||| | ||||||| ||||||||    
T  39953210 acgccgacaccgctaataattttagaaaatcacataatttagtgtaattgtatgtgtc 39953153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 40181871 - 40181920
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||| |||||||||||| ||||||||| |||||||| |||||||||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgt 40181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 16927298 - 16927197
Alignment:
Q  86 ttatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatt 185  Q
    ||||||| ||||||||||  |||||| | || |||||||||||| ||  | ||| || ||| ||||||||||| | ||||||| |||||||| |||||||    
T  16927298 ttatgaagcacggataca--cacagacatcaaacacgacacagacactgacacgtcggcatagctaataatttgaaaaaatcatataattcagtgtaatt 16927201  T
Q  186 atat 189  Q
    ||||    
T  16927200 atat 16927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 17831639 - 17831538
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| |||||||||||||||||| ||| || ||||||| || ||      |||||||  ||||||||||| ||||||||| || ||||| |||||| |    
T  17831639 tatgaagcacggatacagacacagacaccggatacgacactgacac------gccgacaccgctaataatttgagaaaatcacattattcagtgtaatca 17831546  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  17831545 tatgtgtc 17831538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 19562685 - 19562629
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||| |||||||||||| ||||||||  ||| |||| |||||||||||||||    
T  19562685 acgccgacactgctaataatttgagaaaatctcatagttcagtgtaattatatgtgt 19562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 28460767 - 28460815
Alignment:
Q  141 cgacattgctaataattttagaaaatcagataattcaatgtaattatat 189  Q
    |||||||| ||||||||| ||||||||| |||||| |||||||||||||    
T  28460767 cgacattgttaataatttcagaaaatcaaataattaaatgtaattatat 28460815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 38503272 - 38503372
Alignment:
Q  94 cacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||| ||||| || ||  |||| ||||| || || || || ||||||  ||||||||||| ||||||||| ||| |||| |||||||||||||||    
T  38503272 cacggatacggacacggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgt 38503371  T
Q  194 c 194  Q
    |    
T  38503372 c 38503372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 12443524 - 12443469
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    |||||||||  ||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  12443524 acgccgacacagctaataatttgagaaaatcacataattcagtgtaattgtatgtg 12443469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 17425144 - 17425101
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||    
T  17425144 taataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 32724164 - 32724105
Alignment:
Q  135 atacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||| | ||||||||| ||||| | | |||||| ||||||||||||||||||    
T  32724164 atacgccgacatcgttaataatttgagaaatttacataatttaatgtaattatatgtgtc 32724105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 25098617 - 25098563
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    |||||||  ||| ||||||| ||||||||| |||||||| |||||||||||||||    
T  25098617 gccgacaccgctgataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 25361896 - 25361938
Alignment:
Q  152 ataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtc 25361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 30749854 - 30749892
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30749854 ttttagaaaatcacataattcagtgtaattatatgtgtc 30749892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 30771305 - 30771343
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  30771305 ttttagaaaatcacataattcagtgtaattatatgtgtc 30771343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 44482240 - 44482282
Alignment:
Q  152 ataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtc 44482282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 1262879 - 1262928
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||  ||||||||||| ||||||||| |||||||||| ||||||    
T  1262879 acgccgacacagctaataatttgagaaaatcacataattcaatataatta 1262928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 2288218 - 2288181
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattat 187  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  2288218 taataatttaagaaaatcacataattcaatgtaattat 2288181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 5376584 - 5376515
Alignment:
Q  117 gacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||| || || || |||||||||  ||||||||||| ||||||| | |||||||| ||||||||    
T  5376584 gacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10233260 - 10233305
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| || ||||||||| |||||||| ||||||||||||||||    
T  10233260 ctaataaattgagaaaatcacataattcagtgtaattatatgtgtc 10233305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 29163445 - 29163388
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||| |||||  |||||||| |||||||||| ||||||||||||||    
T  29163445 acgccgacaccgctaaaaatttaggaaaatcacataattcaatttaattatatgtgtc 29163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 16164366 - 16164322
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtc 16164322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 22781434 - 22781490
Alignment:
Q  134 aatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatg 190  Q
    ||||||| ||||  ||||||||||||| ||||||| |||||| ||| ||||||||||    
T  22781434 aatacgctgacaccgctaataattttataaaatcatataattaaatataattatatg 22781490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 30847779 - 30847727
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| |||||||||||| | ||||| | ||||||||||||||| |||||||||    
T  30847779 gacactgctaataatttgaaaaaatgacataattcaatgtaatcatatgtgtc 30847727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 39130818 - 39130774
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtc 39130774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 40747824 - 40747780
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||||||| |||||    
T  40747824 taataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 52903257 - 52903301
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  52903257 taataatttaataaaatcatataattcagtgtaattatatgtgtc 52903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 225382 - 225275
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    ||||||||||||| |||||||| || ||| |||||||||| || ||  | |||||||||  | ||||||||| ||||||| | ||||| |||||||||||    
T  225382 tatgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaatta 225283  T
Q  187 tatgtgtc 194  Q
    || |||||    
T  225282 taagtgtc 225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 16203898 - 16203802
Alignment:
Q  98 gatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||||| |||  ||| ||||| || || || | ||||||| |||||||||||| ||||||||  |||||| | ||||||||||||||||    
T  16203898 gatacagacacagacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtc 16203802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 23012462 - 23012415
Alignment:
Q  147 tgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  23012462 tgctaataatttgagaaaatcatataatttaatgtaattatatgtgtc 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 6471942 - 6471897
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  6471942 gctaataatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 17925223 - 17925179
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  17925223 taataatttaagaaaatcacataattcaatgtaataatatgtgtc 17925179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 32630786 - 32630742
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||    
T  32630786 taataatttgagaaaattatataattcaatgtaattatatgtgtc 32630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 41091316 - 41091264
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| ||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  41091316 gacactgctaatgatttgagaaaatcacataattcagtgtaattatatgtgtc 41091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 3966500 - 3966555
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||  ||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  3966500 gccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtc 3966555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 6401443 - 6401550
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||||||||| || ||| ||| |||||| || ||| | |||||||||   ||||   ||||||||||||| | ||| || ||||||||    
T  6401443 tatgaagcacggatacagacacggacaccggacgcgacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaatta 6401542  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  6401543 tatgtgtc 6401550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 17177137 - 17177038
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| |||||||| |||||| ||||| | || ||  ||||||| |||  ||||||||||| | ||||||| | |||||| ||||||||    
T  17177137 tatgaagcacggatacggacacagacaccagatacgactcggacactgatacgccaacacagctaataatttgaaaaaatcaaaaaattcattgtaatta 17177038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 21522695 - 21522794
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| |  ||| |||||||||| || ||  | |||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  21522695 tatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21522794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 21533261 - 21533360
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| |  ||| |||||||||| || ||  | |||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  21533261 tatgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21533360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 12927652 - 12927706
Alignment:
Q  140 ccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||| ||||||||||| ||||||||| |||||| | ||||||||||| ||||    
T  12927652 ccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgtc 12927706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 15410562 - 15410456
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||||||||| |||   || | |||||||||||| || ||  | |||||||||  ||||||||||| ||||||| | || ||||| |||||| |    
T  15410562 tatgaaacacggatacggacgtggacatcagacacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatca 15410463  T
Q  187 tatgtgt 193  Q
    |||||||    
T  15410462 tatgtgt 15410456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 30098334 - 30098372
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattata 188  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  30098334 taataatttgagaaaatcacataattcaatgtaattata 30098372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 30502441 - 30502395
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  30502441 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30502395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 30542784 - 30542738
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||    
T  30542784 gctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 39758286 - 39758324
Alignment:
Q  156 ttttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  39758286 ttttagaaaatcacataattcagtgtaattatatgtgtc 39758324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 42029767 - 42029801
Alignment:
Q  157 tttagaaaatcagataattcaatgtaattatatgt 191  Q
    |||||||||||| ||||||||||||||||||||||    
T  42029767 tttagaaaatcacataattcaatgtaattatatgt 42029801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 8420022 - 8420071
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||| ||||||||||| | ||||| | |||||||||||||||||    
T  8420022 acgccgacatagctaataatttgaaaaaataacataattcaatgtaatta 8420071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 18592070 - 18592123
Alignment:
Q  139 gccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtg 192  Q
    |||||||  ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  18592070 gccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtg 18592123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 27144458 - 27144515
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  ||||||||||| || |||||| |||||| | ||||||||||||||||    
T  27144458 acgccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtgtc 27144515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 31084318 - 31084367
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||||||  ||||||||||| | ||||||| |||||||||||||||||    
T  31084318 acgccgacacagctaataatttgaaaaaatcacataattcaatgtaatta 31084367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 32766996 - 32766951
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||| ||||||||  | ||||||||||||||||||||||    
T  32766996 gctaataatttgagaaaatcgcacaattcaatgtaattatatgtgt 32766951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 9449477 - 9449521
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||||||||||| ||| ||||||    
T  9449477 taataatttgagaaaatcacataattcaatgtaactatttgtgtc 9449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 18421900 - 18421848
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| |||| ||||||| ||||||||| ||||| || ||||||||||||||||    
T  18421900 gacactgctgataatttgagaaaatcacataatccagtgtaattatatgtgtc 18421848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 18607172 - 18607104
Alignment:
Q  126 cagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| ||| |||| ||||||| | ||||||||| ||||||| | ||||||||||||||| ||| |||||    
T  18607172 cagacaccgatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtc 18607104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 19293511 - 19293431
Alignment:
Q  113 accagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||||||||| ||||| |||| ||||    ||||||||| ||||||| | |||||| | |||||| ||||||||    
T  19293511 accagacacgacacagacaccaacacgctgacaccaataataatttaagaaaataacataattaagtgtaatcatatgtgt 19293431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 39205879 - 39205931
Alignment:
Q  141 cgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||| |||||||||||| ||||||||| ||||||   |||||||||||||||    
T  39205879 cgacactgctaataatttgagaaaatcatataattaggtgtaattatatgtgt 39205931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 9843 - 9950
Alignment:
Q  87 tatgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    |||||| ||||||||| ||||| || ||| |||||||||  || ||| | |||||||||  ||||||  ||||||||||||| | ||| || ||||||||    
T  9843 tatgaagcacggatacggacacggacaccggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaatta 9942  T
Q  187 tatgtgtc 194  Q
    ||||||||    
T  9943 tatgtgtc 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 99901 - 99944
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgt 193  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  99901 taataattttagaaaataacataattcaatgtaattatatgtgt 99944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 90851 - 90895
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  90851 taataatttgagaaaatcatataattcagtgtaattatatatgtc 90895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 28845 - 28902
Alignment:
Q  137 acgccgacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||  | ||||||||| ||||||||  |||||||||||||||||||||||||    
T  28845 acgccgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtc 28902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 575 - 477
Alignment:
Q  88 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaatcagataattcaatgtaatta 186  Q
    ||||| ||||||||| ||||| || |||  ||||| ||| || ||  ||||||||||| |||||||||||| | ||||||| | |||||| ||||||||    
T  575 atgaagcacggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatta 477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 3262 - 3340
Alignment:
Q  88 atgaaacacggatacagacacagataccagacacgacacagataccaatacgccgacattgctaataattttagaaaat 166  Q
    ||||| |||||||| |||||| || ||| |||||||||| |||||  | ||| ||||| |||||| |||||||||||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 44578 - 44532
Alignment:
Q  148 gctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  44578 gctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtc 44532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 26400 - 26445
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| ||||||||| ||||||||||||  |||||||||||    
T  26400 ctaataatttgagaaaatcacataattcaatgtcgttatatgtgtc 26445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 9799 - 9754
Alignment:
Q  149 ctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||||||||| |||||||||  ||||||| ||||||||||||||||    
T  9799 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 9754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 6312 - 6364
Alignment:
Q  142 gacattgctaataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    |||| |||||||||||| | |||||   |||||||||||||||||||||||||    
T  6312 gacactgctaataatttgacaaaattgcataattcaatgtaattatatgtgtc 6364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 240072 - 240028
Alignment:
Q  150 taataattttagaaaatcagataattcaatgtaattatatgtgtc 194  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaatcatatgtgtc 240028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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