View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_13 (Length: 315)

Name: NF4128_low_13
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_13
NF4128_low_13
[»] chr1 (20 HSPs)
chr1 (1-300)||(35476151-35476450)
chr1 (107-235)||(45531481-45531610)
chr1 (117-242)||(35248176-35248302)
chr1 (1-162)||(45525454-45525612)
chr1 (109-195)||(35219016-35219101)
chr1 (100-164)||(35211948-35212012)
chr1 (2-163)||(35224899-35225060)
chr1 (111-191)||(35190329-35190410)
chr1 (100-164)||(35204881-35204945)
chr1 (1-157)||(35295876-35296032)
chr1 (111-188)||(35147324-35147402)
chr1 (111-163)||(35199918-35199970)
chr1 (114-196)||(35270386-35270471)
chr1 (1-196)||(8638852-8639049)
chr1 (1-41)||(35212074-35212114)
chr1 (111-240)||(35262918-35263049)
chr1 (100-157)||(35194484-35194542)
chr1 (1-41)||(34309457-34309497)
chr1 (1-41)||(35190471-35190511)
chr1 (1-41)||(35270544-35270584)
[»] chr3 (5 HSPs)
chr3 (100-179)||(899875-899954)
chr3 (1-78)||(17664587-17664664)
chr3 (106-147)||(53924385-53924426)
chr3 (1-164)||(19246990-19247153)
chr3 (103-164)||(17664689-17664750)
[»] chr7 (1 HSPs)
chr7 (110-195)||(38631839-38631923)
[»] chr2 (1 HSPs)
chr2 (108-164)||(33138746-33138801)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35476450 - 35476151
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476450 tgatgggtggttggagattgagatgggagagttctttaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 35476351  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatgacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35476350 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatgacag 35476251  T
Q  201 aatactgcttgaagatttgaagtctcaacttttcaacatattgtgatttatattcatgttccaaacggtctatttgtaaattatatttcttattataatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476250 aatactgcttgaagatttgaagtctcaacttttcaacatattgtgatgtatattcatgttccaaacggtctatttgtaaattatatttcttattataatt 35476151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 45531610 - 45531481
Alignment:
Q  107 aatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgt-aggggtcttgcgtcttggatgacaaaatac 205  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||| | |||||||| ||||||||||  | ||||     
T  45531610 aatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaactttcagtgaactatgtcatgggtcttgtgtcttggatggtagaatag 45531511  T
Q  206 tgcttgaagatttgaagtctcaacttttca 235  Q
    ||||||||||||||||||  ||||||||||    
T  45531510 tgcttgaagatttgaagttccaacttttca 45531481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 35248302 - 35248176
Alignment:
Q  117 ttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatgacaaaatactgcttgaaga 215  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||  |||||||||  |||||||||| || || |  | |||||||    
T  35248302 ttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactgaactatgcaaggggtcttatgtcttggatggcagaacaacgtttgaaga 35248203  T
Q  216 tttgaagtctcaacttttcaacatatt 242  Q
    ||||||||  |||||||||||||||||    
T  35248202 tttgaagttccaacttttcaacatatt 35248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 45525612 - 45525454
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| |||||||   |||| | |||| | |  || ||||||||| || |||||||| |||||| | | || |  | |     
T  45525612 tgatgggtggttggagattgagatgggagagttc---aattcaggccttgaaaatgaagaagtccagatgagtgttatcgagataaaggctggtgagacc 45525516  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacatt 162  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  45525515 aaggggaatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaacatt 45525454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 35219101 - 35219016
Alignment:
Q  109 tttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggat 195  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||| |||| |||||||||| |||||||||    
T  35219101 tttctttgttgaaggaatagaagttaggcctaaggaagacaa-taaacaacatacactgaactatgcaggggtcttgtgtcttggat 35219016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 35212012 - 35211948
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  35212012 gaagggaaatttctatcttgaaggaatagaacttagacctaaggtagacaattaaacaacattca 35211948  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 35225060 - 35224899
Alignment:
Q  2 gatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccga 101  Q
    ||||| ||||| ||||||||||||| ||||||||| | || | |||| | || || ||||||||| || ||||||||||| ||| | |||| |     ||    
T  35225060 gatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgttattgatataaagggtggtcattgga 35224961  T
Q  102 agggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattc 163  Q
    || ||  ||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||    
T  35224960 agagaggtttctttgttgaaggaatagaagttaggcctaaggaagaccattaggcaacattc 35224899  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 35190410 - 35190329
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtctt 191  Q
    ||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||  |||| ||||  ||||||||||||||||    
T  35190410 tctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacattccgtgaactatgcaaggggtcttgcgtctt 35190329  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 35204945 - 35204881
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||| ||||    
T  35204945 gaagggaaatttctttcttgaaggaatagaacttaggcctaaggtatacaattaaacaactttca 35204881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 35295876 - 35296032
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||||||||||||||||||||||| ||||||||| |||| | || | | || || ||||||||| || |||||||| || | | | |||| |  |  |    
T  35295876 tgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgagtgttatggatacaaagggtggtcagggg 35295975  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagca 157  Q
    |||  |  ||| ||||||||||||||||||||||| ||||||||||  |||||||||    
T  35295976 aagacaggtttatttcttgaaggaatagaagttaggcctaaggaaggaaattaagca 35296032  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 35147402 - 35147324
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgt 188  Q
    ||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||  |||| ||||  |||||||||||||    
T  35147402 tctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacattccatgaactatgcaaggggtcttgcgt 35147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 35199970 - 35199918
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattc 163  Q
    |||||||||||||||||||||| || |||||| |||||||||||| |||||||    
T  35199970 tctttcttgaaggaatagaagtcaggcctaagtaagacaattaagtaacattc 35199918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 35270471 - 35270386
Alignment:
Q  114 ttcttgaaggaatagaagttagacctaag--gaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatg 196  Q
    |||||||||||||||||||||| ||||||   || |||||||| |||||||||||||| ||||  |||||||||| ||| ||||||    
T  35270471 ttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacattcactgaactatgcaaggggtcttgggtcgtggatg 35270386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8639049 - 8638852
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagata---gatggtgatttg 97  Q
    ||||||||||||||||| |||||||| ||||||||| |||| | || | | || || ||||||||| || ||| ||| || ||||   |||||| ||       
T  8639049 tgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagtattactgggataaaggatggttatact 8638950  T
Q  98 ccgaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatg 196  Q
      |||| ||  ||||||| ||||||||||||||||||| || |||||||| || ||| ||| ||  ||| || |||| |||||||||| ||||||||||    
T  8638949 tggaagagaggtttctttgttgaaggaatagaagttaggcccaaggaagataa-taatcaatataaactaaactatggaggggtcttgtgtcttggatg 8638852  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35212114 - 35212074
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  35212114 tgatgggtggttggagattgagatgggagagttcttcaatt 35212074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 35263049 - 35262918
Alignment:
Q  111 tctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggatgacaaaatactgct 209  Q
    |||||||||||||||||||| |||| |||||  || ||||||||||| |||| |||  | ||||  |||||||||| ||||||| || || |||| || |    
T  35263049 tctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgcaaggggtcttgtgtcttggttggcagaataatgtt 35262950  T
Q  210 tgaaga-tttgaagtctcaacttttcaacata 240  Q
    |  ||| || |||||| |||||||||||||||    
T  35262949 tctagagttggaagtcccaacttttcaacata 35262918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 35194542 - 35194484
Alignment:
Q  100 gaagggaaatttctttcttg-aaggaatagaagttagacctaaggaagacaattaagca 157  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||||| | |||||||||    
T  35194542 gaagagaaatttctttcttttaaggaatagaagttagtcctaaggaaaagaattaagca 35194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34309497 - 34309457
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||| ||||||||||||||||||| ||||||||| ||||    
T  34309497 tgatggatggttggagattgagatgggagagttcttcaatt 34309457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35190511 - 35190471
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  35190511 tgatgggtggttggagattgagatcggagagttcttcaatt 35190471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35270584 - 35270544
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatt 41  Q
    ||||||||||||||||||||||||||  |||||||| ||||    
T  35270584 tgatgggtggttggagattgagatgggggagttcttcaatt 35270544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 899875 - 899954
Alignment:
Q  100 gaagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggg 179  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||| ||||||||| ||||    
T  899875 gaagggaaatttctttcttgaaggaatagaagttaggcctaaggaggaaaattaagcaatattcattgaattatgcaggg 899954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17664587 - 17664664
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttat 78  Q
    |||||| ||||||||||||||||||| ||| ||||| |||| | |||||  || || |||||||||||| ||||||||    
T  17664587 tgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaagtccacatgagtgttat 17664664  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 53924385 - 53924426
Alignment:
Q  106 aaatttctttcttgaaggaatagaagttagacctaaggaaga 147  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  53924385 aaatttctttcttgaaggaatagaagttaggcctaagtaaga 53924426  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19246990 - 19247153
Alignment:
Q  1 tgatgggtggttggagattgagatggaagagttcttaaatttatgcctcggaggtgtagaagtccacattagtgttattgagatagatggtgatttgccg 100  Q
    |||||| ||||||||||||||||||| ||| ||||| |||| | |||||  || || |||| ||||||| ||||||||  |||    ||||   | |  |    
T  19246990 tgatggatggttggagattgagatgggagaattctttaattcaagcctcaaagatgaagaaatccacatgagtgttatccagaggagtggtacgtgggtg 19247089  T
Q  101 aagggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    | ||||||||| ||| |||||||||| |||||||| |||||| | | ||||||||||| |||||    
T  19247090 aggggaaatttgtttattgaaggaatcgaagttaggcctaagtatggcaattaagcaatattca 19247153  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 17664689 - 17664750
Alignment:
Q  103 gggaaatttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    ||||||||| ||| |||||||||| |||||||| |||||| | | ||||||||||| |||||    
T  17664689 gggaaatttgtttattgaaggaatcgaagttaggcctaagtatggcaattaagcaatattca 17664750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 38631923 - 38631839
Alignment:
Q  110 ttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatg-taggggtcttgcgtcttggat 195  Q
    |||||| |||||||||||||||||||  | || |||||||||| ||||||||| |||||| ||||  |||||||||| |||||||||    
T  38631923 ttctttgttgaaggaatagaagttaggac-aaagaagacaatttagcaacattgactgaa-tatgcaaggggtcttgtgtcttggat 38631839  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 33138746 - 33138801
Alignment:
Q  108 atttctttcttgaaggaatagaagttagacctaaggaagacaattaagcaacattca 164  Q
    |||| ||| ||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  33138746 atttgtttattgaaggaatagaagttag-cctaagtaagagaattaagcaatattca 33138801  T

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