View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_15 (Length: 298)
Name: NF4128_low_15
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 25352211 - 25352085
Alignment:
| Q |
167 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
266 |
Q |
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| T |
25352211 |
ttggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaacctgcccaattg |
25352112 |
T |
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| Q |
267 |
tgattaacgatgatgattatgatgatg |
293 |
Q |
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| T |
25352111 |
tgattaacgatgatgattatgatgatg |
25352085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 25352363 - 25352245
Alignment:
| Q |
19 |
ctgcttaccctaacccgcctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttactta----ataatgtactttctgtaaca |
114 |
Q |
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| T |
25352363 |
ctgctgaccctaacccgcctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaatatataatgtactttctgtaaca |
25352264 |
T |
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| Q |
115 |
catctcttggatattgtag |
133 |
Q |
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| T |
25352263 |
catctcttggatattgtag |
25352245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 25349672 - 25349547
Alignment:
| Q |
167 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
266 |
Q |
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| T |
25349672 |
ttggatttaaagatggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggt-ctgggagagatgcaactagtccaattg |
25349574 |
T |
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| Q |
267 |
tgattaacgatgatgattatgatgatg |
293 |
Q |
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| T |
25349573 |
tgattaacgatgatgattatgatgatg |
25349547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 25357010 - 25356914
Alignment:
| Q |
40 |
taccatcttatgtgagtcttcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
133 |
Q |
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| T |
25357010 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 25349805 - 25349711
Alignment:
| Q |
40 |
taccatcttatgtgagtcttcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||||||| |
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| T |
25349805 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 25356880 - 25356754
Alignment:
| Q |
167 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
266 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||| || | |||||| |
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| T |
25356880 |
ttggatttaaaggtggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgcagccagtccaattt |
25356781 |
T |
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| Q |
267 |
tgattaacgatgatgattatgatgatg |
293 |
Q |
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| T |
25356780 |
tgattaacgatgatgaatatgatgatg |
25356754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 25361677 - 25361580
Alignment:
| Q |
36 |
cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
133 |
Q |
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| T |
25361677 |
cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
25361580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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