View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4128_low_16 (Length: 295)
Name: NF4128_low_16
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 33647412 - 33647670
Alignment:
| Q |
1 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33647412 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgtgtggctcagatagggctaccgctcttcgttgtgctgtttctggttgttctgctgcttc |
33647511 |
T |
|
| Q |
101 |
tgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtctcggtttctaat |
200 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33647512 |
tgccgaggttgtcaaacttctgcttgatgcatctgcagatgttagttccgctgatgcatatcgtaaccggtgcagcaacttggttgtctcggtttctaat |
33647611 |
T |
|
| Q |
201 |
agtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33647612 |
agtctctacggttcaaggaagaggatactacaagggatactagaaggggtagatgatgt |
33647670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 25812231 - 25812488
Alignment:
| Q |
1 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgcttc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25812231 |
cttatattctcggaaccagtcgtgttgatgtcaaccgagtgtgcggctcagatagggctaccgctcttcgttgtgctgtttctggatgttctgctgcttc |
25812330 |
T |
|
| Q |
101 |
tgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtctcggtttctaat |
200 |
Q |
| |
|
||| || ||| |||| |||| |||||||| ||||||||||||||||||| ||||| || | ||| | ||||||||||||| |||||||||| |||| | |
|
|
| T |
25812331 |
tgctgaagttatcaacctttcgcttgatgcatctgcagatgttagttccattgatgtgaatgataa-cagtgcagcgacttgattgtctcggtgtctagt |
25812429 |
T |
|
| Q |
201 |
agtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgt |
259 |
Q |
| |
|
||| | | ||||||||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
25812430 |
agtatattcggttcaaggaagaggatactacgatccatactagaaggcgtagatgatgt |
25812488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25817904 - 25818117
Alignment:
| Q |
1 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgcttc |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| |||| | ||| ||||| |||| ||| |||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
25817904 |
cttatattcttggaaccggtcgtgtcaatgttagccgaccttgtggttcagacaggggtacagctcttcatttttctgttactggttgttctgctgcttc |
25818003 |
T |
|
| Q |
101 |
tgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtctcggtttctaat |
200 |
Q |
| |
|
||||||| || | ||||||||| |||||| |||||||||| |||| | ||||| || | ||| |||| | ||||||| |||||||||| |||||| |
|
|
| T |
25818004 |
tgccgagattattaagcttttggttgatgcttctgcagatggtagtgttgttgatgagaatgacaactggtgtaacgacttgattgtctcggtgtctaat |
25818103 |
T |
|
| Q |
201 |
agtctctacggttc |
214 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
25818104 |
agtatctccggttc |
25818117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30121843 - 30122007
Alignment:
| Q |
1 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgta-tggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgctt |
99 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| || || || ||| || ||| | ||||| |||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
30121843 |
cttatattcttggaacaggtcgggttgatgttaatcg-gtctagtggatccgatggtgctactgctcttcattgtgcggttgttgggggttctgctgctt |
30121941 |
T |
|
| Q |
100 |
ctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggta |
165 |
Q |
| |
|
| || || || ||||| |||||||||||| ||| || |||| |||| | | |||||| ||||||| |
|
|
| T |
30121942 |
cccccaagattatcaagattttgcttgatgcatcggcggatgctagtgctgttgatgccaacggta |
30122007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University