View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_17 (Length: 290)

Name: NF4128_low_17
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_17
NF4128_low_17
[»] chr5 (3 HSPs)
chr5 (195-280)||(12157536-12157621)
chr5 (80-138)||(12157678-12157736)
chr5 (18-55)||(12157761-12157798)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 12157621 - 12157536
Alignment:
Q  195 agtctatatttatacacaaagaaccaagttgataggaaatcaaggggatattggtctttgattgggtgctactagtcttgcctttg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12157621 agtctatatttatacacaaagaaccaagttgataggaaatcaaggggatattggtctttgattgggtgctactagtcttgcctttg 12157536  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 12157736 - 12157678
Alignment:
Q  80 tagggaatgagttttgggtatgttcccacaacaacgtaaggtatgatgattcatgctaa 138  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12157736 taggaaatgagttttgggtatgttcccacaacaacgtaaggtatgatgattcatgctaa 12157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12157798 - 12157761
Alignment:
Q  18 gttgcaaggtcgaaagctgagtttgtgaaactgaagag 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12157798 gttgcaaggtcgaaagctgagtttgtgaaactgaagag 12157761  T

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