View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_18 (Length: 272)
Name: NF4128_low_18
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 28773329 - 28773572
Alignment:
| Q |
19 |
gtctctccatcaaatttttccctttcttcaattgatagttggttatagcatgtttctccaccctcctcgctccttttaagatccacctgccaaagattgt |
118 |
Q |
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| T |
28773329 |
gtctctccatcaaatttttccctttcttcaattgatagttggttatagcatgtttctccaccctcctcgctccttttaagatccacctgccaaagattgt |
28773428 |
T |
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| Q |
119 |
tcatcaagggtaacccctttaacacctattataggctataactcaaattgcacttcggactaattaggagaaggaatgaacttacagatgaatatcctgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28773429 |
tcatcaagggtaacccctttaacacctattataggctataactcaaattgcacttcggactaattaggagaaggaatgaacttacagatgaatatcctgc |
28773528 |
T |
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| Q |
219 |
tatacagtaaccatgatgtttatccaaagtttgtattgtctctg |
262 |
Q |
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| T |
28773529 |
tatacagtaaccatgatgtttatccaaagtttgtattgtctctg |
28773572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 28765494 - 28765737
Alignment:
| Q |
19 |
gtctctccatcaaatttttccctttcttcaattgatagttggttatagcatgtttctccaccctcctcgctccttttaagatccacctgccaaagat--t |
116 |
Q |
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|||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||| | |||| ||| | ||||||||||||||| ||||||| | |
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| T |
28765494 |
gtctcttcatcaaattttgccctttcttcgtttgatagttggttatagcatttttctccatcgtccttgcttcgtttaagatccacctgacaaagatatt |
28765593 |
T |
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| Q |
117 |
gttcatcaagggtaacccctttaacacctattataggctataactcaaattgcacttcggactaattaggagaaggaatgaacttacagatgaatatcct |
216 |
Q |
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| T |
28765594 |
gttcatcaagtgtgacccttttaacacctat-ataggctataactgatattgcacatttccctaatt-ggagaaggaatgaacttacagatgagtatcct |
28765691 |
T |
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| Q |
217 |
gctatacagtaaccatgatgtttatccaaagtttgtattgtctctg |
262 |
Q |
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|||| |||| |||||||||||| ||||| |||||| |||||||||| |
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| T |
28765692 |
gctacacagaaaccatgatgttgatccagagtttgcattgtctctg |
28765737 |
T |
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