View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_19 (Length: 247)
Name: NF4128_low_19
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42334891 - 42334656
Alignment:
| Q |
1 |
cttggacccaattcatatctttatgtttatggtgaccttgaacccctaaaagacaaacacttccttttggaannnnnnnnnnnnn-ggtagagcatcctt |
99 |
Q |
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| T |
42334891 |
cttggacccaattcatatctttatgtttatggtgaccttgaacccctaaaagacaaacacttccttttggaactatatatttttttggtacagcatcctt |
42334792 |
T |
|
| Q |
100 |
ttgaagctaatcttatacattttccttatatagcataaacaatcgataaaagaataaacgtgaccatttgaccctttcctgttgccacatatattatatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42334791 |
ttgaagctaatcttatacattttccttatatagcataaacaatcgataaaagaataaacgtgaccatttgaccctttcctgttgccacatatattatatc |
42334692 |
T |
|
| Q |
200 |
tcataccttcttatcaaaatctcatcgtatcagaat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42334691 |
tcataccttcttatcaaaatctcatcgtatcagaat |
42334656 |
T |
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