View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_2 (Length: 513)

Name: NF4128_low_2
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_2
NF4128_low_2
[»] chr4 (6 HSPs)
chr4 (11-240)||(13848174-13848403)
chr4 (244-410)||(44420769-44420936)
chr4 (244-306)||(37500975-37501037)
chr4 (244-306)||(15333237-15333299)
chr4 (154-240)||(3743882-3743968)
chr4 (194-237)||(4446065-4446108)
[»] chr7 (4 HSPs)
chr7 (20-243)||(34343782-34344002)
chr7 (244-410)||(37617400-37617564)
chr7 (244-410)||(36828297-36828460)
chr7 (244-393)||(34500167-34500317)
[»] scaffold0044 (1 HSPs)
scaffold0044 (244-410)||(83512-83676)
[»] chr1 (5 HSPs)
chr1 (244-410)||(8114316-8114481)
chr1 (244-400)||(3170502-3170666)
chr1 (244-306)||(51739326-51739385)
chr1 (193-244)||(614783-614834)
chr1 (193-247)||(1481034-1481088)
[»] chr5 (5 HSPs)
chr5 (244-303)||(28171824-28171883)
chr5 (261-306)||(10203861-10203906)
chr5 (194-237)||(5143270-5143313)
chr5 (194-237)||(5815915-5815958)
chr5 (194-237)||(7627796-7627839)
[»] chr3 (3 HSPs)
chr3 (244-303)||(2993690-2993749)
chr3 (148-236)||(34823081-34823169)
chr3 (244-304)||(8337337-8337397)
[»] chr2 (3 HSPs)
chr2 (244-291)||(24836204-24836251)
chr2 (244-279)||(8149041-8149076)
chr2 (244-279)||(8153665-8153700)
[»] scaffold0526 (1 HSPs)
scaffold0526 (244-306)||(5129-5191)
[»] chr8 (4 HSPs)
chr8 (244-304)||(1061588-1061648)
chr8 (194-237)||(35532021-35532064)
chr8 (206-240)||(35532793-35532827)
chr8 (361-410)||(1061652-1061700)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 13848174 - 13848403
Alignment:
Q  11 agagacaattgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagta 110  Q
    ||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13848174 agagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagta 13848273  T
Q  111 gaagatggaggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggt 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13848274 gaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttcactcatggt 13848373  T
Q  211 ccctttaatttgaggtccatattaggggct 240  Q
    ||||||||||||||||||||||||||||||    
T  13848374 ccctttaatttgaggtccatattaggggct 13848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 244 - 410
Target Start/End: Original strand, 44420769 - 44420936
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataagannnnnnnnn-gaaagaatatcaaacataaggatcatt 342  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||          |||||||||||||||||||| ||||||    
T  44420769 taaaataatttgtcagaaaaataactatcaatatatatatgaagtaatatattaaatatacgattttttttttgaaagaatatcaaacataagaatcatt 44420868  T
Q  343 aaggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44420869 aaggcttccttaaaaaaattattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 44420936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 37500975 - 37501037
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga 306  Q
    ||||||||||||||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  37500975 taaaataatttgtcagaaaaataactgctaaaatatagatgaattaatatattaaatataaga 37501037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 15333237 - 15333299
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga 306  Q
    ||||||||||||||| ||| |||||||  |||||||| ||||| |||||| ||||||||||||    
T  15333237 taaaataatttgtcaaaaatataactactaaaatatagatgaattaatatattaaatataaga 15333299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 3743968 - 3743882
Alignment:
Q  154 ttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaattt-gaggtccatattaggggct 240  Q
    |||||| |||| ||||||| |||||  | || |||||| ||||||||||| |||||||| |||||||| | |||||||||||||||||    
T  3743968 ttttcctaaaagatatgaccggctacagcagatcatttgttgaggttcacccatggtcc-tttaatttaggggtccatattaggggct 3743882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 4446065 - 4446108
Alignment:
Q  194 tgaggttcactcatggtccctttaatttgaggtccatattaggg 237  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||    
T  4446065 tgaggttcaccaatggtccctttaaattgaggtccatattaggg 4446108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 34343782 - 34344002
Alignment:
Q  20 tgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagtagaagatgga 119  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34343782 tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga 34343881  T
Q  120 ggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaat 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||    
T  34343882 ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttgaggttcactcatggtccctttaat 34343978  T
Q  220 ttgaggtccatattaggggcttcc 243  Q
    ||||||| ||||||| ||||||||    
T  34343979 ttgaggttcatattaagggcttcc 34344002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 244 - 410
Target Start/End: Complemental strand, 37617564 - 37617400
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga-nnnnnnnnngaaagaatatcaaacataaggatcatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||          |||||||||||||||||||||||||||    
T  37617564 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatatacgattttttttttgaaagaatatcaaacataaggatcatt 37617465  T
Q  343 aaggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37617464 aaggcttccttcaaaaa---attaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 37617400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 244 - 410
Target Start/End: Original strand, 36828297 - 36828460
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataagannnnnnnnngaaagaatatcaaacataaggatcatta 343  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||  |         ||||||||||||||||||||||||||||    
T  36828297 taaaataatttgtcgaaaaaataactatcaaaatatatatgaagtaatatattaaatatacaatttttttttgaaagaatatcaaacataaggatcatta 36828396  T
Q  344 aggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36828397 aggcttccttcaaaaa---attaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 36828460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 34500167 - 34500317
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga-nnnnnnnnngaaagaatatcaaacataaggatcatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||          |||||||||||||||||||| ||||||    
T  34500167 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatatacgattttttttttgaaagaatatcaaacataagaatcatt 34500266  T
Q  343 aaggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaa 393  Q
    |||||||||||       |||||||||||||||||||||||||||||||||    
T  34500267 aaggcttccttaaaaaaattattaaggctaaagacaatcaaatcatttgaa 34500317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 244 - 410
Target Start/End: Complemental strand, 83676 - 83512
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga-nnnnnnnnngaaagaatatcaaacataaggatcatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||          |||||||||||||||||||||||||||    
T  83676 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatatacgattttttttttgaaagaatatcaaacataaggatcatt 83577  T
Q  343 aaggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  83576 aaggcttccttcaaaaa---attaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 83512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 244 - 410
Target Start/End: Complemental strand, 8114481 - 8114316
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga-nnnnnnnnngaaagaatatcaaacataaggatcatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||          |||||||||||||||||||||||||||    
T  8114481 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatatacgattttttttttgaaagaatatcaaacataaggatcatt 8114382  T
Q  343 aaggcttccttnnnnnnnttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8114381 aaggcttccttcaaaaaa--attaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 8114316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 244 - 400
Target Start/End: Original strand, 3170502 - 3170666
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga----nnnnnnnnngaaagaatatcaaacataaggatc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||             ||||||||||||||||||||||||    
T  3170502 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatataagatttttttttttttgaaagaatatcaaacataaggatc 3170601  T
Q  340 attaaggcttccttnnnnnnnttattaaggct----aaagacaatcaaatcatttgaaaaagaga 400  Q
    ||||||||||||||       |||||||||||    |||||||||||||||||||||||||||||    
T  3170602 attaaggcttccttataaaaattattaaggctaaagaaagacaatcaaatcatttgaaaaagaga 3170666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 51739385 - 51739326
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga 306  Q
    ||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||||||||    
T  51739385 taaaataatttgtcagaaaaataact---aaaatatatatgaattaatatattaaatataaga 51739326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 614783 - 614834
Alignment:
Q  193 ttgaggttcactcatggtccctttaatttgaggtccatattaggggcttcct 244  Q
    |||||||  ||||||||||||||||| |||||||| ||||||| ||||||||    
T  614783 ttgaggtctactcatggtccctttaaattgaggtctatattagaggcttcct 614834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 1481088 - 1481034
Alignment:
Q  193 ttgaggttcactcatggtccctttaatttgaggtccatattaggggcttcctaaa 247  Q
    |||||||||| |  |||||| ||||||||||||||||||||||| ||| ||||||    
T  1481088 ttgaggttcattggtggtccttttaatttgaggtccatattaggagctccctaaa 1481034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 28171883 - 28171824
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatata 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28171883 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatata 28171824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 10203906 - 10203861
Alignment:
Q  261 aaaataactatcaaaatatatatgaagtaatattttaaatataaga 306  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||    
T  10203906 aaaaaaactattaaaatatatatgaagtaatatattaaatataaga 10203861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 5143270 - 5143313
Alignment:
Q  194 tgaggttcactcatggtccctttaatttgaggtccatattaggg 237  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||    
T  5143270 tgaggttcaccaatggtccctttaaattgaggtccatattaggg 5143313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 5815958 - 5815915
Alignment:
Q  194 tgaggttcactcatggtccctttaatttgaggtccatattaggg 237  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||    
T  5815958 tgaggttcaccaatggtccctttaaattgaggtccatattaggg 5815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 7627796 - 7627839
Alignment:
Q  194 tgaggttcactcatggtccctttaatttgaggtccatattaggg 237  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||    
T  7627796 tgaggttcaccaatggtccctttaaattgaggtccatattaggg 7627839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 2993690 - 2993749
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatata 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2993690 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatatattaaatata 2993749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 34823081 - 34823169
Alignment:
Q  148 gttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaatttgaggtccatattagg 236  Q
    ||||| |||||| |||| ||||||| |||||| | ||||||||| |||||||||||||||| ||| || | |||| |||||||||||||    
T  34823081 gtttttttttcctaaaagatatgaccggctagagcaggtcatttgttgaggttcactcatgatcctttaattttggggtccatattagg 34823169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 8337397 - 8337337
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataa 304  Q
    ||||||||||| |||||||||||||||  |||||||| ||||| |||||| ||||||||||    
T  8337397 taaaataatttttcagaaaaataactactaaaatatagatgaattaatatattaaatataa 8337337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 24836251 - 24836204
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836251 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaat 24836204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 8149076 - 8149041
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatat 279  Q
    ||||||||||||||||||||||||||||||||||||    
T  8149076 taaaataatttgtcagaaaaataactatcaaaatat 8149041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 8153700 - 8153665
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatat 279  Q
    ||||||||||||||||||||||||||||||||||||    
T  8153700 taaaataatttgtcagaaaaataactatcaaaatat 8153665  T

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Target: scaffold0526 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 5191 - 5129
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataaga 306  Q
    ||||||||||||| |||||||||||||  |||||||| ||||| |||||| ||||||||||||    
T  5191 taaaataatttgttagaaaaataactactaaaatatagatgaattaatatattaaatataaga 5129  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 1061588 - 1061648
Alignment:
Q  244 taaaataatttgtcagaaaaataactatcaaaatatatatgaagtaatattttaaatataa 304  Q
    |||||||||||||| ||||||||||||  |||||||  |||||||||||| ||||||||||    
T  1061588 taaaataatttgtccgaaaaataactaataaaatatcaatgaagtaatatattaaatataa 1061648  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 35532064 - 35532021
Alignment:
Q  194 tgaggttcactcatggtccctttaatttgaggtccatattaggg 237  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||    
T  35532064 tgaggttcaccaatggtccctttaaattgaggtccatattaggg 35532021  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 35532793 - 35532827
Alignment:
Q  206 atggtccctttaatttgaggtccatattaggggct 240  Q
    ||||||||||||| |||||||||||||||||||||    
T  35532793 atggtccctttaaattgaggtccatattaggggct 35532827  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 1061652 - 1061700
Alignment:
Q  361 ttattaaggctaaagacaatcaaatcatttgaaaaagagagtatagttag 410  Q
    |||||||||||||| |||||||||||| | ||||||||||||||| ||||    
T  1061652 ttattaaggctaaa-acaatcaaatcaatcgaaaaagagagtatacttag 1061700  T

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