View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_20 (Length: 238)
Name: NF4128_low_20
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_20 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2272049 - 2272282
Alignment:
| Q |
1 |
taaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2272049 |
taaattctcaggagaaactgtaggaaaatcgatccacaagaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcagac |
2272148 |
T |
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| Q |
101 |
tcatgttggtggcaacccacaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272149 |
tcatgttggtggcaacccgcaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtc |
2272248 |
T |
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| Q |
201 |
gccaaacaaatagagacgcctgatgatgtccatc |
234 |
Q |
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| T |
2272249 |
gccaaacaaatagagacgcctgatgatggccatc |
2272282 |
T |
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Target: scaffold0257 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 22463 - 22676
Alignment:
| Q |
4 |
attctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctca |
103 |
Q |
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|||||| |||||||||||| ||| | |||||||| |||| ||||||||||| || | ||||||| || || | ||| |||| || ||||| || |
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| T |
22463 |
attctcgggagaaactgtaataaatccaatccacaccaaaacatcgctccataagaaatcgaacaaaggacgttgtaaaaaaagatgctttgcagacttt |
22562 |
T |
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| Q |
104 |
tgttggtggcaacccacaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgcc |
203 |
Q |
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|||||| ||||||||| ||| |||||||||||||| |||||| ||| |||| || ||||||| || || |||| |||| || | |||||||| || |
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| T |
22563 |
tgttggccgcaacccacgacataaaattgagcatcctgatgaagaattcctcgcttgcataaattgttctttgtaggcaatctatttcgaagtagtcacc |
22662 |
T |
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| Q |
204 |
aaacaaatagagac |
217 |
Q |
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||||||| |||||| |
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| T |
22663 |
aaacaaacagagac |
22676 |
T |
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