View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_21 (Length: 238)

Name: NF4128_low_21
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_21
NF4128_low_21
[»] chr1 (6 HSPs)
chr1 (14-237)||(36526247-36526470)
chr1 (14-227)||(37923585-37923798)
chr1 (11-226)||(37871988-37872202)
chr1 (25-227)||(35051638-35051840)
chr1 (15-133)||(8237318-8237434)
chr1 (74-110)||(19023346-19023382)
[»] chr5 (5 HSPs)
chr5 (14-227)||(23269964-23270176)
chr5 (108-226)||(4430699-4430817)
chr5 (26-196)||(14964904-14965074)
chr5 (14-225)||(26917294-26917505)
chr5 (31-106)||(4431011-4431086)
[»] chr8 (1 HSPs)
chr8 (14-223)||(29468318-29468527)
[»] chr2 (8 HSPs)
chr2 (27-226)||(9252345-9252544)
chr2 (31-225)||(37490804-37490999)
chr2 (71-165)||(13018965-13019059)
chr2 (29-227)||(24588542-24588736)
chr2 (126-225)||(40728271-40728370)
chr2 (66-227)||(8295012-8295173)
chr2 (25-137)||(19920791-19920903)
chr2 (74-112)||(13923026-13923064)
[»] chr7 (3 HSPs)
chr7 (34-226)||(28283839-28284031)
chr7 (29-170)||(5460873-5461014)
chr7 (34-120)||(29443757-29443842)
[»] scaffold0305 (1 HSPs)
scaffold0305 (14-227)||(18608-18820)
[»] chr4 (5 HSPs)
chr4 (14-136)||(43000432-43000554)
chr4 (189-226)||(43381799-43381836)
chr4 (28-89)||(43381919-43381980)
chr4 (67-106)||(29135150-29135189)
chr4 (68-128)||(35762788-35762849)
[»] chr3 (7 HSPs)
chr3 (27-112)||(9738634-9738720)
chr3 (26-104)||(46107349-46107427)
chr3 (56-111)||(21330778-21330833)
chr3 (69-113)||(43059104-43059148)
chr3 (28-111)||(35529008-35529090)
chr3 (70-112)||(47798396-47798438)
chr3 (25-114)||(46016235-46016324)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 36526247 - 36526470
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526247 atcatgaactcgggaactagcataagataatgacgcccgagctaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 36526346  T
Q  114 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526347 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 36526446  T
Q  214 gttcgatagacaccctggaaaacc 237  Q
    ||||||||||||||||||||||||    
T  36526447 gttcgatagacaccctggaaaacc 36526470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 37923585 - 37923798
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    ||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37923585 atcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 37923684  T
Q  114 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 213  Q
    |||||||||||||||  |||||||||||| ||||| ||||| |||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  37923685 tgattcataagtgaaactttgcaagtattcagaattgcgccgaacatggaattggtgctgagattgcttgagatgccatcaaccacttgcttgcaatcaa 37923784  T
Q  214 gttcgatagacacc 227  Q
    |||| |||||||||    
T  37923785 gttctatagacacc 37923798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 37872202 - 37871988
Alignment:
Q  11 atcatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttt 110  Q
    |||||||||||||  ||||||| |||||||||| |   | ||   ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  37872202 atcatcatgaactttggaactaccataagataacgcaactctgactaataagtgggaaacattatttgtttgtctcctaataaaacttatcttaaagttt 37872103  T
Q  111 tgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaat 210  Q
    |||| ||||| |||||||| |||||||  | | |||||  |  | | |||||||||| || |||  |||||||||||| ||| |||||||||||| ||||    
T  37872102 tgattattcagaagtgaagctttgcaaccaatcagaat-accacgagcatggaattgatgttgagattgctagagatgtcgtaaaccacttgcttacaat 37872004  T
Q  211 caagttcgatagacac 226  Q
    ||| |||||| |||||    
T  37872003 caatttcgatggacac 37871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 35051638 - 35051840
Alignment:
Q  25 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataa 123  Q
    |||||||||||||| ||||||||| | | | |||||| ||| ||| |||||||  |||||| |||||||||||| ||||||||||||| | | ||| |||    
T  35051638 gggaactagcataaaataatgacgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaacttttcttaaagttttggtaggttc-taa 35051736  T
Q  124 gtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgataga 223  Q
     ||||||||| ||| |||  | ||| ||| ||||| || |||||||| |||   | ||||  |||  |||||||||||||||| ||||||||| ||||||    
T  35051737 ctgaagtttttcaaatatcaataattgcgtcaaacttgaaattggtgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagtttgataga 35051836  T
Q  224 cacc 227  Q
    ||||    
T  35051837 cacc 35051840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 8237434 - 8237318
Alignment:
Q  15 tcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 114  Q
    ||||||||  |||||| | ||||||||| || || ||||| |||||||| ||||| |||||||| |||||  |||||||||||||||||||| ||||| |    
T  8237434 tcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatattatttgcttgtc--ctaatgaaacttatcttaaaattttggt 8237337  T
Q  115 gattcataagtgaagtttt 133  Q
     | |  |||||||||||||    
T  8237336 aaattctaagtgaagtttt 8237318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 19023346 - 19023382
Alignment:
Q  74 atttgtttgtctcctaatgaaacttatcttaaagttt 110  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19023346 atttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 23270176 - 23269964
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  23270176 atcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagttttga 23270077  T
Q  114 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 213  Q
    |||||||||||||||| ||||||||| || ||||| ||| | ||| |||| |||||| |||  |||||||||||| ||||||||| ||||||||||||||    
T  23270076 tgattcataagtgaagctttgcaagtgttcagaatagcgtcgaacgtggatttggtgttgagattgctagagatgtcgtcaacca-ttgcttgcaatcaa 23269978  T
Q  214 gttcgatagacacc 227  Q
    ||||||||||||||    
T  23269977 gttcgatagacacc 23269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 4430817 - 4430699
Alignment:
Q  108 ttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgc 207  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  4430817 ttttgatgattcacaagtgaagttttgcaagtattcataatcgcgccaaacatgaaattggtgctgaagttgctagaaatgccgtcaaccacttacttgc 4430718  T
Q  208 aatcaagttcgatagacac 226  Q
    |||  ||||||||||||||    
T  4430717 aattcagttcgatagacac 4430699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 14965074 - 14964904
Alignment:
Q  26 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagt 125  Q
    |||||||| ||||||||||| |||||||  ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |    
T  14965074 ggaactagtataagataatggcgccctaactaataagtgggcaacattatttgattgtctcttgatgaaacttatcttaaagttttgatgattcataaat 14964975  T
Q  126 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaac 196  Q
     || |||||||||| || | |||| ||   || ||  ||||||||||||| ||| |||||||| |||||||    
T  14964974 taaattttgcaagtgtttaaaatctcgttgaatataaaattggtgctgaaattgttagagatgtcgtcaac 14964904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 26917505 - 26917294
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaag-ttttg 112  Q
    |||||||||  ||| || ||||||||||||||||||||| | ||  |  ||||||||| |||||| |||||||||||| ||||||||||||||| |||||    
T  26917505 atcatgaacatggggacaagcataagataatgacgcccttgctagtagatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttg 26917406  T
Q  113 atgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatca 212  Q
      ||||| ||||||||| ||||||| |||  ||||| ||| ||||||| |||||| || |||     ||||  |||||||||||||||||||||||||||    
T  26917405 tagattc-taagtgaagctttgcaaatatcaagaatagcgtcaaacattgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatca 26917307  T
Q  213 agttcgatagaca 225  Q
    |||||||||||||    
T  26917306 agttcgatagaca 26917294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 4431086 - 4431011
Alignment:
Q  31 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaa 106  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  4431086 tagcataagataattccgccctagctaacaagtgggaaacattatttgcttctctcctaataaaacttatcttaaa 4431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 29468318 - 29468527
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    |||||||||| | |||||||||||| ||||||||  ||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29468318 atcatgaacttgagaactagcataacataatgacatcctagctaacaagtatgcaacattatttgtttgtctcataatgaaacttatcttaaagttttga 29468417  T
Q  114 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 213  Q
    |||||||||||||||| ||||||| |||| || || ||||| ||||||||  ||||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  29468418 tgattcataagtgaagctttgcaaatattcaggattgcgccgaacatggacctggtgctaaagttgctagagatgcaatcaactacttgcttgcaatcaa 29468517  T
Q  214 gttcgataga 223  Q
    ||||||||||    
T  29468518 gttcgataga 29468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 9252544 - 9252345
Alignment:
Q  27 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtg 126  Q
    ||||||| |||||||||| ||| ||  | |||||| |||| ||||||||| ||||||||  ||||||||||||| ||||||||||||||||||| |||||    
T  9252544 gaactaggataagataataacgtccaggctaacaaatgggtaacattattcgtttgtcttttaatgaaacttatgttaaagttttgatgattcaaaagtg 9252445  T
Q  127 aagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 226  Q
    ||| ||||| |  ||| ||||| ||||  |||||| |||||||||| |  ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9252444 aagctttgccaccattcagaatagcgctgaacatgaaattggtgcttagattgctagagatgccgtcaaccacttgcttacaatcaagtttgatagacac 9252345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 37490999 - 37490804
Alignment:
Q  31 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagt 130  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||||  |||||| |||||||||||||||| |||||||||||||||||  |||||||     
T  37490999 tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttgatgattcagtagtgaagc 37490900  T
Q  131 tttgcaagtattgagaatcgcgccaa-acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 225  Q
    |||||||  ||| | |||   | ||| ||||| |||||||  |||  |||||||||||| ||||||| | |||||| |||||||||| ||||||||    
T  37490899 tttgcaatcattcaaaataatgtcaacacatgaaattggtattgagattgctagagatgtcgtcaacgatttgcttacaatcaagtttgatagaca 37490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 13018965 - 13019059
Alignment:
Q  71 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaat 165  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| |||  ||  ||| ||||| ||||||||||||||||    
T  13018965 attatttgattgtctcctaatgaaacttatcttaaaattttgatgattcagatgtgaagctttataaccattaagaatagcgccaaacatggaat 13019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 24588542 - 24588736
Alignment:
Q  29 actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga 127  Q
    ||||||||||||||||||||||||   ||   | ||||||||| |||||| |||| | ||||| |||||||     |||||||| | ||||| |||||||    
T  24588542 actagcataagataatgacgccctttctagtgaatgggcaacactatttgattgtgttctaataaaacttac----aagttttgttagattc-taagtga 24588636  T
Q  128 agttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 227  Q
    || ||| ||| |||  ||||| ||||||||||||||||||||| |||     ||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  24588637 agctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgcttgcaatcaagttcgatagacacc 24588736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 40728271 - 40728370
Alignment:
Q  126 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 225  Q
    ||||||||||| || || || |||||| | | || |||  ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  40728271 gaagttttgcaggtgtttaggatcgcgtcgagcacggatatggtgctgaagttgctagagatgtcgtcaaatacttgcttgcaatcaagttcgatagaca 40728370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 8295173 - 8295012
Alignment:
Q  66 gcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaa 164  Q
    |||||| ||||| |||||||| |||| ||||||||||||||||||||   ||||| ||||||||| ||||||| |||  ||||   ||||||||||| ||    
T  8295173 gcaacactatttatttgtctcttaataaaacttatcttaaagttttggcagattc-taagtgaagctttgcaaatatcaagaacaacgccaaacatgaaa 8295075  T
Q  165 ttggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 227  Q
    ||| || |||     | ||  ||||||| || |||||||||||||||||||||||||||||||    
T  8295074 ttgatgttgagtccccaagctatgccgtaaatcacttgcttgcaatcaagttcgatagacacc 8295012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 19920903 - 19920791
Alignment:
Q  25 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataa 123  Q
    ||||||| | |||||||||||||| ||| | |||||| |||  |||| |||||| |||| |||||||||||| || |||||||||||||| ||||| |||    
T  19920903 gggaactggtataagataatgacgtccttgctaacaaatggcaaacactatttgcttgtttcctaatgaaacctagcttaaagttttgatagattc-taa 19920805  T
Q  124 gtgaagttttgcaa 137  Q
    |||| |||||||||    
T  19920804 gtgatgttttgcaa 19920791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 13923064 - 13923026
Alignment:
Q  74 atttgtttgtctcctaatgaaacttatcttaaagttttg 112  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13923064 atttgcttgtttcctaatgaaacttatcttaaagttttg 13923026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 28284031 - 28283839
Alignment:
Q  34 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagtttt 133  Q
    |||||||||||||| ||||   |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  28284031 cataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcagaagtgaagctta 28283932  T
Q  134 gcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 226  Q
    |||   ||| ||||| | |   ||||| ||||  ||| |||  |||||||||||| | |||  ||||||||| | ||||||||| ||||||||    
T  28283931 gcagccattcagaatagtgttgaacatagaatcagtgttgagattgctagagatgtcatcaggcacttgcttacgatcaagttcaatagacac 28283839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 5461014 - 5460873
Alignment:
Q  29 actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga 127  Q
    |||||||||||||||||| |  |||| ||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||| |  ||||  ||| ||    
T  5461014 actagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaaacttatcttaaagttttggtaaattctcaag-ga 5460916  T
Q  128 agttttgcaagtattgagaatcgcgccaaacatggaattggtg 170  Q
    || ||||||||| |  ||||| ||||| |||||||||||||||    
T  5460915 agctttgcaagtctctagaatagcgccgaacatggaattggtg 5460873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 29443842 - 29443757
Alignment:
Q  34 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa-cttatcttaaagttttgatgattca 120  Q
    ||||||||||| | ||||| | |||||||||  |||  ||||||| ||||||   ||||||| |||||||||||||||||||||||||    
T  29443842 cataagataataatgcccttgctaacaagtgaacaaatttatttgcttgtcta--aatgaaaacttatcttaaagttttgatgattca 29443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 18608 - 18820
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    ||||||||||  ||| ||||||| || |||||||  | | | |||||||||||||| ||||||| ||| | || ||||||||||| |||| || ||||||    
T  18608 atcatgaactttggagctagcatgaggtaatgacaacttggctaacaagtgggcaaaattatttctttttttcttaatgaaacttgtcttcaaattttga 18707  T
Q  114 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 213  Q
    ||||||| |||||||| |||||||  ||| | ||| ||   |||| ||||||||||| |||  || ||||| ||| ||||||||||||| || |||||||    
T  18708 tgattcagaagtgaagctttgcaaccattcaaaatagc-ataaacgtggaattggtgttgagatttctagatatgtcgtcaaccacttgtttacaatcaa 18806  T
Q  214 gttcgatagacacc 227  Q
    |||| |||||||||    
T  18807 gttcaatagacacc 18820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 43000432 - 43000554
Alignment:
Q  14 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    |||||||||| || || ||||||||||||||||| || |||  ||||| || | || ||| |||| |||||||||||| |||||||| ||||||||||||    
T  43000432 atcatgaacttggaaattagcataagataatgacaccttagcaaacaaatgagtaatattgtttgcttgtctcctaataaaacttatattaaagttttga 43000531  T
Q  114 tgattcataagtgaagttttgca 136  Q
    |  ||  ||||||||| ||||||    
T  43000532 ttttttttaagtgaagctttgca 43000554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 43381836 - 43381799
Alignment:
Q  189 ccgtcaaccacttgcttgcaatcaagttcgatagacac 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43381836 ccgtcaaccacttgcttgcaatcaagttcgatagacac 43381799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 43381980 - 43381919
Alignment:
Q  28 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctccta 89  Q
    ||||||||||||||||||||| ||| | |||||| || |||||| |||||||||||||||||    
T  43381980 aactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtctccta 43381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 29135189 - 29135150
Alignment:
Q  67 caacattatttgtttgtctcctaatgaaacttatcttaaa 106  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  29135189 caacattatttatttgtctcctaacgaaacttatcttaaa 29135150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 35762849 - 35762788
Alignment:
Q  68 aacattatttgtttgtctcctaatgaaactta-tcttaaagttttgatgattcataagtgaa 128  Q
    ||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||| |||||||    
T  35762849 aacattatttgtttgtcccataataaaatttaatattaaagttttgatgattcacaagtgaa 35762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 9738634 - 9738720
Alignment:
Q  27 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttg 112  Q
    |||||| |||||||||||||||| |||| |||||| || ||||||||||||| ||||| ||||||| |||  |||||||||||||||    
T  9738634 gaactaacataagataatgacgctctagctaacaaatgagcaacattatttggttgtcacctaatgaaaaaatatcttaaagttttg 9738720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 46107427 - 46107349
Alignment:
Q  26 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatctta 104  Q
    ||||||| ||||| |||||||||| |||| |||||| || ||||||||||||  ||||| ||||||||||| |||||||    
T  46107427 ggaactaacataatataatgacgctctagctaacaaatgagcaacattatttacttgtcacctaatgaaacgtatctta 46107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 21330778 - 21330833
Alignment:
Q  56 taacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 111  Q
    |||||| || |||||||||||| ||||||||| ||| |||||||||||||||||||    
T  21330778 taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagtttt 21330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 43059148 - 43059104
Alignment:
Q  69 acattatttgtttgtctcctaatgaaacttatcttaaagttttga 113  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  43059148 acattatttgtttgtcttataatgaaacttatcttaaaattttga 43059104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 35529008 - 35529090
Alignment:
Q  28 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 111  Q
    ||||| ||||||||||||||   |||| |||||| || ||||||| ||||||||||| | ||||||||||||| ||||| ||||    
T  35529008 aactaacataagataatgacattctagctaacaa-tgagcaacatcatttgtttgtcgcttaatgaaacttattttaaaatttt 35529090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 47798396 - 47798438
Alignment:
Q  70 cattatttgtttgtctcctaatgaaacttatcttaaagttttg 112  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  47798396 cattatttatttgtctcttaataaaacttatcttaaagttttg 47798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 46016235 - 46016324
Alignment:
Q  25 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 114  Q
    |||||| | ||||||||||||| || |||  |||||| || |||||||| |||| |||||  | |||||||||||| ||| |||||||||    
T  46016235 gggaacaaacataagataatgatgctctaactaacaaatgagcaacattgtttgattgtcctcaaatgaaacttatattatagttttgat 46016324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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