View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_25 (Length: 227)
Name: NF4128_low_25
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4090961 - 4090725
Alignment:
| Q |
1 |
cagtggaaggaagacgacttcttacttcttagcaagttccctactccaaaggtatgcatgagtcaatggnnnnnnnnnnnnnnnnnnccttaaccgagtt |
100 |
Q |
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| T |
4090961 |
cagtggaaggaagacgacttcttacttcttagcaagttccctactccaaaggtatgcatgagtcaatggaaaaaaataaaaataaaaccttaactgagtt |
4090862 |
T |
|
| Q |
101 |
tgtaacgagtgacatccttcatcttaaaagtcgattttacaaggata-------------acaaaaatatgatagtcatcaacattgaag-ttagacact |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||| |
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| T |
4090861 |
tgtaacgagtgacatccttcatcttaaaagtcgattttacaaggataagtttaacacaatagaaaaatataatagtcatcaacattgaagtttagacact |
4090762 |
T |
|
| Q |
187 |
tgtcatta-atgtaatcaaatataagtagttttattt |
222 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
4090761 |
tgtcattacatgtaatcaaatataagtagttttattt |
4090725 |
T |
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