View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_26 (Length: 224)
Name: NF4128_low_26
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_26 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 36526659 - 36526475
Alignment:
| Q |
1 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526659 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
36526560 |
T |
|
| Q |
101 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
185 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36526559 |
gatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagc |
36526475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 37923996 - 37923804
Alignment:
| Q |
19 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaag |
118 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||| |||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
37923996 |
ggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgtgtctaagaggggatcgaggggagttcattaaag |
37923899 |
T |
|
| Q |
119 |
caaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttt |
213 |
Q |
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|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
37923898 |
caaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggttt |
37923804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4430479 - 4430689
Alignment:
| Q |
1 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtg-at |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
4430479 |
tggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagaggtgtat |
4430578 |
T |
|
| Q |
100 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg |
199 |
Q |
| |
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||| |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| |
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| T |
4430579 |
cgagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgataatatggcttg |
4430678 |
T |
|
| Q |
200 |
gtactatgagg |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
4430679 |
atactatgagg |
4430689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 23269746 - 23269949
Alignment:
| Q |
1 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
100 |
Q |
| |
|
||||||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | |||||| | | ||| |||| |
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|
| T |
23269746 |
tggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatc |
23269845 |
T |
|
| Q |
101 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg |
200 |
Q |
| |
|
|| |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| || ||||||||| |
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| T |
23269846 |
gaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttgg |
23269945 |
T |
|
| Q |
201 |
tact |
204 |
Q |
| |
|
|||| |
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|
| T |
23269946 |
tact |
23269949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
18 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
117 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
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|
| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
118 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
190 |
Q |
| |
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|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
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|
| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 40728566 - 40728378
Alignment:
| Q |
19 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
115 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
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|
| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
116 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttt |
213 |
Q |
| |
|
||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |||||||| |
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|
| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggttt |
40728378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
| Q |
70 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
169 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
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|
| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
|
| Q |
170 |
gaggtctaaaagaagcgataa |
190 |
Q |
| |
|
| ||| ||||||||||||||| |
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|
| T |
13019158 |
gtggtttaaaagaagcgataa |
13019138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 29468749 - 29468537
Alignment:
| Q |
1 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat |
99 |
Q |
| |
|
||||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | |
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|
| T |
29468749 |
tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg |
29468651 |
T |
|
| Q |
100 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg |
199 |
Q |
| |
|
||| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| |||||||| |
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|
| T |
29468650 |
cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg |
29468551 |
T |
|
| Q |
200 |
gtactatgaggttt |
213 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
29468550 |
gtactttgaggttt |
29468537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 18998 - 18846
Alignment:
| Q |
34 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
132 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
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|
| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
133 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcg |
186 |
Q |
| |
|
| |||||||||||||||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg |
18846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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