View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_3 (Length: 490)
Name: NF4128_low_3
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_3 |
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| [»] chr4 (13 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 27411853 - 27412328
Alignment:
| Q |
15 |
gagtgacatgggatcacatggaattgttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataac |
114 |
Q |
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| T |
27411853 |
gagtgacatgggatcacatggaattgttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataac |
27411952 |
T |
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| Q |
115 |
ccacttaaaatttgagacaatgcaatggtgaatggaacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagac |
214 |
Q |
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| T |
27411953 |
ccacttaaaatttgagacaatgcaatggtgaatggaacctgatgttttttcttgcattttgggtgggtatagctaatccaatggtagacatgctttagac |
27412052 |
T |
|
| Q |
215 |
atctcacatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctac |
314 |
Q |
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| T |
27412053 |
atctcacatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggaggaaagaagcgaaccgatattgaacacaagaacttgagctac |
27412152 |
T |
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| Q |
315 |
tatgaaccaaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtc |
414 |
Q |
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| T |
27412153 |
tatgaaccaaattttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtc |
27412252 |
T |
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| Q |
415 |
aattaaactttctcttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttat |
490 |
Q |
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| T |
27412253 |
aattaaactttctattccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttat |
27412328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 220 - 490
Target Start/End: Original strand, 27422605 - 27422875
Alignment:
| Q |
220 |
acatcttagatttatgtgcaacttgttaggcttgtgatggaacggtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctactatga |
319 |
Q |
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|||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
27422605 |
acatctcagatttgtgtgcaacttgttaggcttgtgttggaacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatga |
27422704 |
T |
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| Q |
320 |
accaaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaatta |
419 |
Q |
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| T |
27422705 |
accacattttatatttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaatta |
27422804 |
T |
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| Q |
420 |
aactttctcttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttat |
490 |
Q |
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| T |
27422805 |
aactttctattccatgaataggtctgttttatggtagggtaggcctctaagacaataccatgtgatcttat |
27422875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 331 - 490
Target Start/End: Complemental strand, 27570694 - 27570535
Alignment:
| Q |
331 |
tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctctt |
430 |
Q |
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| T |
27570694 |
tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctatt |
27570595 |
T |
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| Q |
431 |
ccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttat |
490 |
Q |
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| T |
27570594 |
ccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttat |
27570535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 27419554 - 27419732
Alignment:
| Q |
41 |
ttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataaccc-acttaaaatttgagacaatgcaa |
139 |
Q |
| |
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|||||||||||||||||| | ||||||||| |||||||||||| || ||| | |||||| |||||| ||||||| |||| || ||||||||||||||| |
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| T |
27419554 |
ttttcaaggattaggaagcttaatggaagagcatgcacataccccacattgtgagataatggccaacaaataaccctacttgaagtttgagacaatgcaa |
27419653 |
T |
|
| Q |
140 |
tggtgaatggaacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagacatctcacat |
223 |
Q |
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| T |
27419654 |
tggtgaaagaaacctgatgttttttcttgcattt-----gggtatagataatccaattgtagacatgctttagacatctcacat |
27419732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 264 - 427
Target Start/End: Original strand, 27415014 - 27415176
Alignment:
| Q |
264 |
gtgtgaggagggaagaagcgaaccgatattgaacacaagaacttgagctactatgaaccaaattttatatttttgcaagaccaactccatgatatttgca |
363 |
Q |
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||||||||||| || ||| ||||| || |||||||||||| | || || |||||||||| |||||||||| || |||||| | || ||||||||||||| |
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| T |
27415014 |
gtgtgaggaggaaa-aagagaaccaattttgaacacaagatcatgggcctctatgaaccacattttatattattacaagacaagcttcatgatatttgca |
27415112 |
T |
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| Q |
364 |
taccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
427 |
Q |
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| T |
27415113 |
taccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttct |
27415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 430
Target Start/End: Original strand, 27425311 - 27425423
Alignment:
| Q |
318 |
gaaccaaattttatatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaat |
417 |
Q |
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|||||| | ||||||||||||| |||| |||||||||||||||||||||| | || |||||||| ||||| ||| || |||| |||||| |||||| ||| |
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| T |
27425311 |
gaaccacaatttatatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaat |
27425410 |
T |
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| Q |
418 |
taaactttctctt |
430 |
Q |
| |
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| T |
27425411 |
taaactttctctt |
27425423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 459
Target Start/End: Complemental strand, 27566634 - 27566449
Alignment:
| Q |
276 |
aagaagcgaaccgatattgaacacaagaacttgagctactatgaaccaaattttatat--ttttgcaagaccaactccatgatatttgcataccaggaca |
373 |
Q |
| |
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|||||| ||||| |||| |||||||||| | | | ||||| ||||| ||||||||| |||| || ||| || ||||| | |||||||||||| ||| |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatatagtttttcaggacaaattccattaaatttgcataccataaca |
27566535 |
T |
|
| Q |
374 |
gaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatggtagggt |
459 |
Q |
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|||||||| ||||| |||||| |||| |||||| || |||||||||||||||||||| ||| ||||| ||||||| |||| |||| |
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| T |
27566534 |
gaactttgcggtccctgcattgctaaataagtaacatggtcaattaaactttctcttgcattgataggcctgttttttggtggggt |
27566449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 27419887 - 27419963
Alignment:
| Q |
351 |
catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct |
427 |
Q |
| |
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|||||||||||| |||||| ||||||||| | ||||| ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27419887 |
catgatatttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct |
27419963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 27425105 - 27425151
Alignment:
| Q |
180 |
ggtatagctaatccaatggtagacatgctttagacatctcacatctt |
226 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
27425105 |
ggtatagctaatgcaatggtagacatggtttagacatctcacatctt |
27425151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 27566791 - 27566754
Alignment:
| Q |
182 |
tatagctaatccaatggtagacatgctttagacatctc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27566791 |
tatagctaatccaatggtagacatgctttagacatctc |
27566754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 27564085 - 27564031
Alignment:
| Q |
315 |
tatgaaccaaattttatatttttgcaagaccaactccatgatatttgcataccag |
369 |
Q |
| |
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||||||||| |||||||||||||||||||| ||| |||||| ||| ||| ||||| |
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| T |
27564085 |
tatgaaccacattttatatttttgcaagacaaaccccatgaaattcgcacaccag |
27564031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 27566913 - 27566861
Alignment:
| Q |
41 |
ttttcaaggattag--gaagataaatggaagaaaatgcacataccctactttg |
91 |
Q |
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|||||||| ||||| ||||||||||||||||| |||||||||||| |||||| |
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| T |
27566913 |
ttttcaagcattagatgaagataaatggaagaacatgcacataccccactttg |
27566861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 27570922 - 27570881
Alignment:
| Q |
182 |
tatagctaatccaatggtagacatgctttagacatctcacat |
223 |
Q |
| |
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|||| |||||||||||||||||||||| | |||||||||||| |
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| T |
27570922 |
tataactaatccaatggtagacatgctctcgacatctcacat |
27570881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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