View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4128_low_5 (Length: 448)
Name: NF4128_low_5
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4128_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 27430486 - 27430907
Alignment:
| Q |
15 |
tatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatgtgttcaaatagtgaagttagtgcttaattaaactcgtaaaan |
114 |
Q |
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| T |
27430486 |
tatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatttgttcaaatagtgaagtttgtgcttaattaaactcgtaaaaa |
27430585 |
T |
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| Q |
115 |
nnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgaccatcttccacaggacgatcagactccttct |
214 |
Q |
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| T |
27430586 |
tatatata------ccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattgatgaccatcttccacaggacgatcagactccttct |
27430679 |
T |
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| Q |
215 |
cccatgtttgtgaaacttttctgaaaaataattacataattggataagttttctaattgtaccnnnnnnnctcaaaaccaagtaggactatgaaacaatc |
314 |
Q |
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| T |
27430680 |
cccatgtttgtgaaacttttctgaaaaataattacataattggataagttttctaattgtaccaaaaaaactcaaaaccaagtaggactatgaaacaatc |
27430779 |
T |
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| Q |
315 |
aaataattttactgtgtcagccaaaaccataataactagaggaaacaacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcaca |
414 |
Q |
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| T |
27430780 |
aaataattttactgtgtcagccaaaaccataataactagaggaaacaacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcaca |
27430879 |
T |
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| Q |
415 |
tgtagtggatatgatgacaatgatgatg |
442 |
Q |
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| T |
27430880 |
tgtagtggatatgatgacaatgatgatg |
27430907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 27448560 - 27448668
Alignment:
| Q |
129 |
ccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaa |
228 |
Q |
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| T |
27448560 |
ccttggaaaatcggtgtgcaagatctttttttggccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaa |
27448659 |
T |
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| Q |
229 |
acttttctg |
237 |
Q |
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| T |
27448660 |
atttttctg |
27448668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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