View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4128_low_7 (Length: 386)

Name: NF4128_low_7
Description: NF4128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4128_low_7
NF4128_low_7
[»] chr7 (3 HSPs)
chr7 (7-386)||(27430027-27430406)
chr7 (7-181)||(27447304-27447478)
chr7 (209-380)||(27447476-27447647)


Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 27430027 - 27430406
Alignment:
Q  7 ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27430027 ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt 27430126  T
Q  107 tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27430127 tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa 27430226  T
Q  207 gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27430227 gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatct 27430326  T
Q  307 cagggctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggaggatcctcttgaatttgttgc 386  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27430327 cagagctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgc 27430406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 27447304 - 27447478
Alignment:
Q  7 ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt 106  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27447304 ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt 27447403  T
Q  107 tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga 181  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  27447404 gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga 27447478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 209 - 380
Target Start/End: Original strand, 27447476 - 27447647
Alignment:
Q  209 tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca 308  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||  |||| |||| | ||||||||||    
T  27447476 tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca 27447575  T
Q  309 gggctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggaggatcctcttgaatt 380  Q
    ||| |||||||||||||||||||||||||| |  | ||||||||  ||| |||||| |||||||||||||||    
T  27447576 gggttttgcaagattctacaagtatgatggcctgaataggttgtcctgtgaagaggtggatcctcttgaatt 27447647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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