View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4129_high_1 (Length: 614)
Name: NF4129_high_1
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4129_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 971814 - 971468
Alignment:
| Q |
1 |
ctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatgcccttaatattcttaataa |
100 |
Q |
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| T |
971814 |
ctgcccctggaccagatggtttacctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatgcccttaatgttcttaataa |
971715 |
T |
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| Q |
101 |
caatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaacctactttaccttctgacttcagaccaattgccctttgt |
200 |
Q |
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| T |
971714 |
caatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaatctactttaccttctgacttcagaccaattgccctttgt |
971615 |
T |
|
| Q |
201 |
aatgtaattcttaaaatcattacaaagccaattgcaaatagaatcaaaaaggtcctaccctctattattagttcacaacaaagtacatttttaccaaaca |
300 |
Q |
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| T |
971614 |
aatgtaattcttataatcattataaagacaattgcaaatagaatcaaaaaggtcataccctttattattagtccacaacagagtgcatttttaccaaaca |
971515 |
T |
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| Q |
301 |
agcttatttctgataacaccattatagcttatgaagcctttcatttt |
347 |
Q |
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| T |
971514 |
tgcttatttctgataacaccattctagcttatgaagtctttcatttt |
971468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 364 - 607
Target Start/End: Complemental strand, 971443 - 971200
Alignment:
| Q |
364 |
tctggcgtggttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctatta |
463 |
Q |
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| T |
971443 |
tctggtgtggttggaattaagcttgatatggaaaaagcatatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctatta |
971344 |
T |
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| Q |
464 |
aaattgttaaaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattag |
563 |
Q |
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| T |
971343 |
aaattgttaaaactataatgctgtgtgtcagaagtgtgtctttttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattag |
971244 |
T |
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| Q |
564 |
acaaggagatcctctgcccccttatcttttcataatctgtgctg |
607 |
Q |
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| T |
971243 |
acaaggagatcctctctccccttatcttttcataatttgtgctg |
971200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 373 - 578
Target Start/End: Complemental strand, 43136452 - 43136247
Alignment:
| Q |
373 |
gttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgtta |
472 |
Q |
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| T |
43136452 |
gttggaattaagcttgatctggaaaaggcatatgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtca |
43136353 |
T |
|
| Q |
473 |
aaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggaga |
572 |
Q |
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| T |
43136352 |
atactatcgtgctttgtgtcagaagtgtctctttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggaga |
43136253 |
T |
|
| Q |
573 |
tcctct |
578 |
Q |
| |
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||||| |
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| T |
43136252 |
ccctct |
43136247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 43136749 - 43136591
Alignment:
| Q |
84 |
cttaatattcttaataacaatggagatcctggtaatatcaatcacacttttctttgtcttattcctaaggttaaaaaacctactttaccttctgacttca |
183 |
Q |
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||||||||||| ||| ||||| | ||| |||||||||||| |||||| |||| |||||||| ||||| | ||||| ||||||||||||||||| | | |
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| T |
43136749 |
cttaatattctaaatcacaattgtgatattggtaatatcaaccacactcttctctgtcttatacctaaaatcaaaaaccctactttaccttctgattata |
43136650 |
T |
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| Q |
184 |
gaccaattgccctttgtaatgtaattcttaaaatcattacaaagccaattgcaaataga |
242 |
Q |
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||| ||||| || |||||||| || ||||||| ||||| || |||||||||||||| |
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| T |
43136649 |
tacctattgctctatgtaatgttctttttaaaattattactaaaacaattgcaaataga |
43136591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 6523052 - 6523221
Alignment:
| Q |
24 |
cctgccctgttctatcaatcctattgggcagaaattggtactgagattattgagtatgcccttaatattcttaataacaatggagatcctggtaatatca |
123 |
Q |
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| T |
6523052 |
cctgctctattctatcaatcttattgggaggtcattggtaatgatatcactgattatgtccttaaaatccttaaccataatggggatcctggtaatatca |
6523151 |
T |
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| Q |
124 |
atcacacttttctttgtcttattcctaaggttaaaaaacctactttaccttctgacttcagaccaattgc |
193 |
Q |
| |
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| T |
6523152 |
atcacactcacctttgtcttattcctaaaataaaacatccttctttaccttcagattacagacctattgc |
6523221 |
T |
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