View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4129_high_2 (Length: 562)
Name: NF4129_high_2
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4129_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 305 - 552
Target Start/End: Complemental strand, 43469564 - 43469317
Alignment:
| Q |
305 |
tcatatggaattcagagacgtgtgagaacattgaagagacttataccaaatagtgatgaatctattgggttggatggactttttagagagacagctaatt |
404 |
Q |
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| T |
43469564 |
tcatatggaattcagagacgtgtgagaacattgaagagacttataccaaatagtgatgaatctattgggttggatggactttttagagagacagctaatt |
43469465 |
T |
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| Q |
405 |
acatattgtctttgcaaaatagagtgagtgttatgaaggttatggttgatgtattgacagggtctgatgagtgattcattcatttgtaaagactaaacat |
504 |
Q |
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| T |
43469464 |
acatactgtctttgcaaaatagagtgagtgttatgaaggttatggttgatgtattgacagggtctgatgagtgattcattcatttgtaaagactaaacat |
43469365 |
T |
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| Q |
505 |
ggttttatagttacacaaaatattggttttggttatgtttattttcat |
552 |
Q |
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| T |
43469364 |
ggttttatagttacacaaaatattggttttggttatgtttattttcat |
43469317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 43469802 - 43469629
Alignment:
| Q |
56 |
ttatataaatgttctctcttggtctatcattttgcaatacccctttggaacttgaattttgaaatattcatcaagagttgaaaactttcaatattttctt |
155 |
Q |
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| T |
43469802 |
ttatataaatgttctctcttggtctatcattttgcaatacccctttggaacttgaattttgaaatattattcat-----------tttcaatattttctt |
43469714 |
T |
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| Q |
156 |
tagttatgggaatttcttcacaaccttcttatgaagtaaacaacaattcatcatatttatggagcaaagttttggatgcacaaac |
240 |
Q |
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| T |
43469713 |
tagttatgggaatttattcacaaccttcttatgaagtaaacaacaattcatcatatttatggagcaaagttttggatgcacaaac |
43469629 |
T |
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