View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4129_high_8 (Length: 238)

Name: NF4129_high_8
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4129_high_8
NF4129_high_8
[»] chr1 (3 HSPs)
chr1 (5-203)||(8294560-8294759)
chr1 (87-202)||(30149106-30149222)
chr1 (92-160)||(30153832-30153900)
[»] chr7 (9 HSPs)
chr7 (87-222)||(25755724-25755860)
chr7 (91-222)||(25763671-25763803)
chr7 (100-222)||(25740983-25741106)
chr7 (87-203)||(25733301-25733418)
chr7 (87-161)||(25747215-25747289)
chr7 (5-51)||(25741146-25741192)
chr7 (5-51)||(25755884-25755930)
chr7 (5-46)||(25733450-25733491)
chr7 (8-48)||(25747319-25747359)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 8294560 - 8294759
Alignment:
Q  5 gtgactgatgttagaatcttgataccatcaaagttgtacttgccctccaactcttccatcgcaggtattagagcatcacgaatgagaaaaatggtggcct 104  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||| ||||  ||||||  |||  ||| |||||||||    
T  8294560 gtgattgatgttagaatcatgataccatcaaaattgtacttgccctccaactcttccgtcccaggtaatagaatatcacgtttgaagaaattggtggcct 8294659  T
Q  105 cttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcaga-tgtaatttataaactctttgacaagtcatggac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||    
T  8294660 cttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgatttttgccacattgtaatttataaactctttgaccagtcatggac 8294759  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 30149106 - 30149222
Alignment:
Q  87 tgagaaaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcaga-tgtaatttataaact 185  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||  | |||| | || ||||||||||||    
T  30149106 tgagcaaaatggtggcctcttccaaaccaaattttgatggttctgattgttatttagtcggtcttttaggtgatgattgtcacattgcaatttataaact 30149205  T
Q  186 ctttgacaagtcatgga 202  Q
     ||||| ||||||||||    
T  30149206 ttttgataagtcatgga 30149222  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 30153832 - 30153900
Alignment:
Q  92 aaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgat 160  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30153832 aaaatggtggcctcttccaaaccaaattgtgacggttctgattgttatttagtcggtcttttgagtgat 30153900  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 25755860 - 25755724
Alignment:
Q  87 tgagaaaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcaga-tgtaatttataaact 185  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | |||| | || ||||||||||||    
T  25755860 tgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttataaact 25755761  T
Q  186 ctttgacaagtcatggacaacagtcgagtcagataag 222  Q
    |||||| ||||||||||| | ||| ||| ||||||||    
T  25755760 ctttgaaaagtcatggactatagttgagccagataag 25755724  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 25763803 - 25763671
Alignment:
Q  91 aaaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcaga-tgtaatttataaactcttt 189  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||| ||||| | |||| | || ||||||||||||||||    
T  25763803 aaaaatggtggcctcttccaaaccaaactgtgatggttcggattgttatttagtctgtcttctgactgattgttgtcacattgcaatttataaactcttt 25763704  T
Q  190 gacaagtcatggacaacagtcgagtcagataag 222  Q
    ||||||  |||||| | ||| ||||||||||||    
T  25763703 gacaaggaatggactatagttgagtcagataag 25763671  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 25741106 - 25740983
Alignment:
Q  100 ggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcagat-gtaatttataaactctttgacaagtca 198  Q
    |||||||||||||||||||||||||||||||||||| |||||||  || ||||| ||||||| | |||| || | |||||||||||||||||| ||||||    
T  25741106 ggcctcttccaaaccaaattgtgatggttctgattgctatttagctggccttttcagtgattattgtcacatagcaatttataaactctttgaaaagtca 25741007  T
Q  199 tggacaacagtcgagtcagataag 222  Q
    ||||| | ||| ||||||||||||    
T  25741006 tggactatagttgagtcagataag 25740983  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 25733418 - 25733301
Alignment:
Q  87 tgagaaaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgattttcgtcaga-tgtaatttataaact 185  Q
    |||| ||||||  ||| |||||||||||||||||||||||||||||||| |||||||  || ||||||||||||| | |||| | || ||||||||||||    
T  25733418 tgagtaaaatgacggcttcttccaaaccaaattgtgatggttctgattgctatttagctggccttttgagtgattattgtcacattgcaatttataaact 25733319  T
Q  186 ctttgacaagtcatggac 203  Q
    |||||| ||||| |||||    
T  25733318 ctttgaaaagtcgtggac 25733301  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 25747289 - 25747215
Alignment:
Q  87 tgagaaaaatggtggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgatt 161  Q
    |||| ||||||  ||||||||||||||||||||||||||| |||||||| |||||||  || |||||||||||||    
T  25747289 tgagtaaaatgacggcctcttccaaaccaaattgtgatggatctgattgctatttagctggccttttgagtgatt 25747215  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 25741192 - 25741146
Alignment:
Q  5 gtgactgatgttagaatcttgataccatcaaagttgtacttgccctc 51  Q
    ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  25741192 gtgactgatgttagaatcactataccatcaaagttgcacttgccctc 25741146  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 25755930 - 25755884
Alignment:
Q  5 gtgactgatgttagaatcttgataccatcaaagttgtacttgccctc 51  Q
    ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  25755930 gtgactgatgttagaatcacaataccatcaaagttgcacttgccctc 25755884  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25733491 - 25733450
Alignment:
Q  5 gtgactgatgttagaatcttgataccatcaaagttgtacttg 46  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  25733491 gtgagtgatgttagaatcacgataccatcaaagttgtacttg 25733450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 25747359 - 25747319
Alignment:
Q  8 actgatgttagaatcttgataccatcaaagttgtacttgcc 48  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  25747359 actgatgttagaatcacgataccatcgaagttgtacttgcc 25747319  T

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