View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4129_low_3 (Length: 348)
Name: NF4129_low_3
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4129_low_3 |
 | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
|
| [»] scaffold0320 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 7054380 - 7054677
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054380 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
7054479 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
7054480 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctcttttcatgttggcttactgatggatgtgatgggttg |
7054579 |
T |
|
| Q |
238 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7054580 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacattc |
7054677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 14462442 - 14462500
Alignment:
| Q |
277 |
tcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14462442 |
tcataggtgtaaggtaccctggcggcggagtgtcaggtgtggcatgcttgattacattc |
14462500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 8212533 - 8212236
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8212533 |
ttgattcaaaaaacctagcattattcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
8212434 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttg |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
8212433 |
ccacactctcaatgtccataaaagaaagagaaatatattaaatttaaaggatggaatgaatctctttccatgttggcttactgatggatgtattgggttg |
8212334 |
T |
|
| Q |
238 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8212333 |
tgtgcagctttcctttcgatgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
8212236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 9290794 - 9290497
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9290794 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgctaaatatagagttcaccatcaaagtgtaatatgtgttcatcatctcaattgaca |
9290695 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
9290694 |
ccacactctcaatgtccacaaaagaaagagaaatatattaatttaaaaggatggaatgaatctctttccatgttggcttactaatggatgtactgggttg |
9290595 |
T |
|
| Q |
238 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9290594 |
tgtgcagctttcctttcaacgttttatagtgtagactcgtcaatggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgccttattacattc |
9290497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 41 - 335
Target Start/End: Complemental strand, 38981097 - 38980803
Alignment:
| Q |
41 |
attcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgacacca |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38981097 |
attcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgacacca |
38980998 |
T |
|
| Q |
141 |
cactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttgtgt |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38980997 |
cactctcaatgtcaacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttccacgttggcttactgatggatgtactgggttgtgt |
38980898 |
T |
|
| Q |
241 |
gcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38980897 |
gcagttttcctttcgacattttatagcgtagactcgtcataggtgtaaggtaccctggcggcggagtgtcaagtgtggcatgctttattacattc |
38980803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 24867259 - 24867391
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
||||||||| | ||||| | ||||||||||||| ||| ||||| |||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
24867259 |
ttgattcaagagacctatcgttcttcaatacataaataaaaatagttaaatataaagttcaccatcaaaatgtaagacgtgttcatcgtctcaattgaca |
24867358 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaa |
170 |
Q |
| |
|
||||||||||||||| || ||| |||||||||| |
|
|
| T |
24867359 |
ccacactctcaatgtacataaatgaaagagaaa |
24867391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 12223 - 12520
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12223 |
ttgattgaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcagagtgtaagatgtgttcatcatctcaattgaca |
12322 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
12323 |
ccacactctcaatgtccacaaaagaaagagatatatattaaattaaaaggatggaatgaatctctttacatgttggcttactgatggatgtactgggttg |
12422 |
T |
|
| Q |
238 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12423 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggctgagtgtcaagtgtggcatgctttattacattc |
12520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 13756 - 13464
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13756 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatataaagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
13657 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggatggaatgaatctctttcattgttggcttactgatggatgtactaggttg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13656 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaaggat-gaatgaatctctttccatgttggcttactgatggatgtactgggttg |
13558 |
T |
|
| Q |
238 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattac |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
13557 |
tgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggtggcggagtgtcaagtgtggcatgctttattac |
13464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 51424986 - 51424689
Alignment:
| Q |
38 |
ttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgaca |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
51424986 |
ttgattcaaaaaacctagcattcttcaattcatgaatcaaacttgttaaatatagagttcaccatcaaagtgtaagatgcgttcatcgtctcaattgaca |
51424887 |
T |
|
| Q |
138 |
ccacactctcaatgtccacaaaagaaagagaaatatattaaattaaaa-ggatggaatgaatctcttt-cattgttggcttactgatggatgtactaggt |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
51424886 |
ccacactctcaatgtccacaaaagaaatagaaatat--taaattaaaaaggatggaatgaatctcttttccatgttggcttactgatggatgtactgggt |
51424789 |
T |
|
| Q |
236 |
tgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51424788 |
tgtgtgcagctttcctttcgacgttttatagcgtagactcgtcataggtgtaaggtaccctggcggtggagtgtcaagtgtgacatgctttattacattc |
51424689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 11686712 - 11686658
Alignment:
| Q |
281 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686712 |
aggtgtaaggtaccctggcggtggagtgtcaagtgtggcatgctttattacattc |
11686658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 24999573 - 24999465
Alignment:
| Q |
42 |
ttcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgttcatcatctcaattgacaccac |
141 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24999573 |
ttcaagaaacctagcactcttcaatacagaaatcaaaattgttaaatatagagttcatcgtcaaagtgtaagatgtgttcatcatctcaattgacaccac |
24999474 |
T |
|
| Q |
142 |
actctcaat |
150 |
Q |
| |
|
||||||||| |
|
|
| T |
24999473 |
actctcaat |
24999465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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