View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4129_low_4 (Length: 346)
Name: NF4129_low_4
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4129_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 6299489 - 6299178
Alignment:
| Q |
21 |
cctatgtcaaaaattgataaaggtacccaaatgagctctccagagactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatga |
120 |
Q |
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| T |
6299489 |
cctatgtcaaaaattgataaaggtacccaaatgagctctccagagactgaaaatgaagaccattcatctccaaaatcttcatccccaattttggccatga |
6299390 |
T |
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| Q |
121 |
atccaaaaagttgccattcagaaaagttagagatcaaagatgtgcagatagactgtcaggctaatgttattaattggtctaagagttatgcatccaagct |
220 |
Q |
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| T |
6299389 |
atccaaaaagttgccattcagaaaagttagagatcaaagatgtgcaggtagactgtcaggctaatgttattaagtggtctaagagttatgcatccaagct |
6299290 |
T |
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| Q |
221 |
aagctctttcaatggtaaggagttaaagaaaagtggtacagaagcttcaggtttggatattgcagagataacatcggacacttccagttccaagtatgtt |
320 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6299289 |
aagctctttcaatggtaaagagttaaagaaaagtggtacagaagcttcaggtttggatattgcagagacaacatcggacacttccagttccaagtatgtt |
6299190 |
T |
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| Q |
321 |
agatagttgatg |
332 |
Q |
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|||||||||||| |
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| T |
6299189 |
agatagttgatg |
6299178 |
T |
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