View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4129_low_5 (Length: 292)
Name: NF4129_low_5
Description: NF4129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4129_low_5 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 41076062 - 41075886
Alignment:
| Q |
116 |
tcaaagtaaaaattattgatcatcacgagtggcatacacgtcgtccactatagttttctctccagaagtagttatcccttgggagaaagaaggagtctcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
41076062 |
tcaaagtaaaaattattgatcatcacgagtggcatacacgtcgtcctctatagtttcctctccaaaagtagttatcccttgagagaaagaaggagtctcg |
41075963 |
T |
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| Q |
216 |
gaaatatctagggaatcttgattctcatgcatgtttttaccttggagaaccactgaccactttttgctagagggatc |
292 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41075962 |
aaaatatctagggaatcttgactctcatgcatgtttttaccttggagaaccactgaccactttttgatagagggatc |
41075886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 41076542 - 41076427
Alignment:
| Q |
1 |
aggatagctatttgtctttcaattttgaaatatcatgagtatttggaatatcccattgttccaatgttatatagaagataaaagagttagtgtatgaaaa |
100 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||| |
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| T |
41076542 |
aggatatccatttgtctttcaattttgaaatatcatgagtatttggaatatcccattgttcctgtgttatatagcagataaaagagttagtgcatggaaa |
41076443 |
T |
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| Q |
101 |
taatataattaagtgt |
116 |
Q |
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|||||||||||||||| |
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| T |
41076442 |
taatataattaagtgt |
41076427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 134 - 292
Target Start/End: Original strand, 9106008 - 9106166
Alignment:
| Q |
134 |
atcatcacgagtggcatacacgtcgtccactatagttttctctccagaagtagttatcccttgggagaaagaaggagtctcggaaatatctagggaatct |
233 |
Q |
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||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
9106008 |
atcatcacgagtggcatactcatcgtccactatagtttcctctcgagaagtagttatcccttgcgagaaagaaggagtctcaaaaatatctagggaatct |
9106107 |
T |
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| Q |
234 |
tgattctcatgcatgtttttaccttggagaaccactgaccactttttgctagagggatc |
292 |
Q |
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| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106108 |
taactattatgcatgtttttaccttggagaaccactgaccactttttgctagagggatc |
9106166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9105097 - 9105211
Alignment:
| Q |
1 |
aggatagctatttgtctttcaattttgaaatatcatgagtatttggaatatcccattgttccaatgttatatagaagataaaagagttagtgtatgaaaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |
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| T |
9105097 |
aggatagccatttgtctttcaattttgaaatatcatgagtatcaggaatatcccattgttcctatgttatatagcagataaaagagttagtgtatggaaa |
9105196 |
T |
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| Q |
101 |
taatataattaagtg |
115 |
Q |
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||||||||||||||| |
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| T |
9105197 |
taatataattaagtg |
9105211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22819559 - 22819677
Alignment:
| Q |
1 |
aggatagctatttgtctttcaattttgaaatatcatgagtatt---tggaatatcccattgttccaatgttatatagaagataaaagagttagtgtatga |
97 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
22819559 |
aggatagccatttgtctttcaatttataaatatcatgagtattatttggaatatcccattgttcctgtgttatatagcagataaaagagttagtgtacgg |
22819658 |
T |
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| Q |
98 |
aaataatataattaagtgt |
116 |
Q |
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||||||||||||||||||| |
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| T |
22819659 |
aaataatataattaagtgt |
22819677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 5710031 - 5710073
Alignment:
| Q |
250 |
ttttaccttggagaaccactgaccactttttgctagagggatc |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
5710031 |
ttttaccttggagaaccactgaccactttttgttagaaggatc |
5710073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 5709901 - 5709940
Alignment:
| Q |
132 |
tgatcatcacgagtggcatacacgtcgtccactatagttt |
171 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |
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| T |
5709901 |
tgatcatcacgagtggcatacacatcgtccactaaagttt |
5709940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 2885388 - 2885346
Alignment:
| Q |
250 |
ttttaccttggagaaccactgaccactttttgctagagggatc |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
2885388 |
ttttaccttggagaaccactgaccactttttgttagaaggatc |
2885346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 2885518 - 2885479
Alignment:
| Q |
132 |
tgatcatcacgagtggcatacacgtcgtccactatagttt |
171 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |
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| T |
2885518 |
tgatcatcacgagtggcatacacatcgtccactaaagttt |
2885479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 16186660 - 16186702
Alignment:
| Q |
250 |
ttttaccttggagaaccactgaccactttttgctagagggatc |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
16186660 |
ttttaccttggagaaccactgaccactttttgttagaaggatc |
16186702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 16186530 - 16186569
Alignment:
| Q |
132 |
tgatcatcacgagtggcatacacgtcgtccactatagttt |
171 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |
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| T |
16186530 |
tgatcatcacgagtggcatacacatcgtccactaaagttt |
16186569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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