View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4130_low_1 (Length: 608)
Name: NF4130_low_1
Description: NF4130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4130_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 5243322 - 5243550
Alignment:
| Q |
11 |
catcatcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243322 |
catcatcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaa |
5243421 |
T |
|
| Q |
111 |
tgatcaaa--nnnnnnnnnnnnnnntttagtttttctaataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataat |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243422 |
tgatcaaagtgtgtgttgtgtgtgttttagtttttctaataaatagctagcatgtggtagtcaatgtttgtgtcttaggtttgtttattttccatataat |
5243521 |
T |
|
| Q |
209 |
gtcttgttatgactttctttggtggtagt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5243522 |
gtcttgttatgactttctttggtggtagt |
5243550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 308 - 594
Target Start/End: Original strand, 5243554 - 5243861
Alignment:
| Q |
308 |
gttaagagtttagttatcttaaa-cacgttgtgttgatgttatgcgctctccttattcttt---ttcctgatttccaattttaatgctgctgtaga-taa |
402 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||| || |||||| |||| ||||||||||||| | || ||| |
|
|
| T |
5243554 |
gttaagagtttagttatcttaaaacgcgttgtgttgatgttatgcgttcttcttatttattattttcctgctttcaaattttaatgctgataatgagtaa |
5243653 |
T |
|
| Q |
403 |
c------aattcgggcatagatgttcttgaacaaattcaagacatgggttttttattaattaaactcttatacaaaataaaatggagaatgaaagtagga |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5243654 |
attgtttaattcgggcatagatgttcttgaacaaattcaagacatgggttttttattaattaaactcttccaaaaaataaaatggagaatgaaagtagga |
5243753 |
T |
|
| Q |
497 |
agaatcaacacaattagtgtaatatcttcgttttgacggtgttt----------gaatttaaaatagaaaattgttatgctctcgagatattcttaagga |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5243754 |
agaatcaacacaattagtgtaatatcttcgttttgagggtgtttggaatagttggaatttaaaatagaaaattgttatgctctagagatattcttaagga |
5243853 |
T |
|
| Q |
587 |
tcataagt |
594 |
Q |
| |
|
|||||||| |
|
|
| T |
5243854 |
tcataagt |
5243861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University