View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4130_low_2 (Length: 459)
Name: NF4130_low_2
Description: NF4130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4130_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 130 - 445
Target Start/End: Complemental strand, 41632006 - 41631692
Alignment:
| Q |
130 |
attttttaatgattgagttacgcataaccaaaattctaagaagaacatcatatcctattaataatttgtttgaccactcgcctcaaatgtggatggttct |
229 |
Q |
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| T |
41632006 |
attttttaatgattgagttacgcataaccaaaattctaagaagaacatcatatcctattaataatttgtttgaccacccgcttcaaatgtggatggttct |
41631907 |
T |
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| Q |
230 |
caccttacaaagcgtttggtaaatttaattatannnnnnngttaaaaaagtaaaatagagttcttaaattaatactatacttagttatttttactttgaa |
329 |
Q |
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| T |
41631906 |
caccttacaaagcgtttggtaaatttaattatatttttt-gttaaaaaagtaaaatagagttcttaaattaatactatacttagttatttttactttgta |
41631808 |
T |
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| Q |
330 |
agagttttggtgggagtgtaacaaaaacagaattcctcgttgtcagacacatttattatattaatctaatgaaatttgatcaacatatactttatcatat |
429 |
Q |
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| T |
41631807 |
agagttttggtgggtgtgtaacaaaaacagaattcctcgttgtcagacacatttattatattaatctaatgaaatttgatcaacatatactttatcatat |
41631708 |
T |
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| Q |
430 |
cataaacctgactgat |
445 |
Q |
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| T |
41631707 |
cataaacctgactgat |
41631692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 41632327 - 41632190
Alignment:
| Q |
1 |
caattcaaatataaacaaaatgataagtcaattttcatgtactcaaatacagttaacggtctcgtgtttaatgaaatatagtctaaaactttacttataa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41632327 |
caattcaaatataaacaaaatgataaggcaattttcatgtactcaaatacagttaacggtctcgtgtttaatgaaatatagtctaaaactttacttataa |
41632228 |
T |
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| Q |
101 |
gttataatcagttcccactttataattcaattttttaa |
138 |
Q |
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| T |
41632227 |
gttataatcagttcccactttacaattcaattttttaa |
41632190 |
T |
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