View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4130_low_3 (Length: 431)
Name: NF4130_low_3
Description: NF4130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4130_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 44248219 - 44248619
Alignment:
| Q |
18 |
aatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44248219 |
aatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttca |
44248318 |
T |
|
| Q |
118 |
aaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44248319 |
aaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttc |
44248418 |
T |
|
| Q |
218 |
tcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44248419 |
tcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaac |
44248518 |
T |
|
| Q |
318 |
atccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44248519 |
atccgtaaaccaatgaccaaatgacaacacaatcgagtcaatttgatctatatccctagcccacatctgatttacttgatctaaatatattgtattatat |
44248618 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
|
|
| T |
44248619 |
t |
44248619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 418
Target Start/End: Complemental strand, 15284338 - 15283941
Alignment:
| Q |
21 |
acttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
15284338 |
acttcttatcttagcatccattccttcaagtttcttctcctcatttccatatggctctctctttgaacaagtaccacccttatcccaaccaccttcaaaa |
15284239 |
T |
|
| Q |
121 |
tgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctca |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15284238 |
tgagtaggtgagtatgttctcacaatcacatcaattttattccctttaaccattttcctctcaattatgctattaagggtagtccttaaagcctttctca |
15284139 |
T |
|
| Q |
221 |
ttggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatc |
320 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||| || |
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|
| T |
15284138 |
ttggaatataaaatccaatatcactataattaaatttaaattcttgacatctaaaacaacctataactgaatcaccttcatagtaaattgaaggaatgtc |
15284039 |
T |
|
| Q |
321 |
cgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatatt |
418 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||| |||||||| | |||||| ||||| ||||||||||||||||||| |
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|
| T |
15284038 |
caaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatttcatttacatgatccaaatatattgtattatatt |
15283941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 15287581 - 15287813
Alignment:
| Q |
22 |
cttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaat |
121 |
Q |
| |
|
||||| |||| | ||||||||||| ||| | |||||||||| || |||| |||| | |||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
15287581 |
cttctaatctcaccatccattcctccaactatcttctcctcttttctataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaat |
15287680 |
T |
|
| Q |
122 |
gagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcat |
221 |
Q |
| |
|
||| |||||| ||||| | ||||| ||||| |||| ||| ||| | ||| |||| |||||||||| ||||||||||||||||| ||||||||||| | |
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|
| T |
15287681 |
gagcaggtgaaaatgttttaacaatcacatctattctatttcctttagcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaa |
15287780 |
T |
|
| Q |
222 |
tggaacataaaatccaatatcagtataattaaa |
254 |
Q |
| |
|
|||||||||||| |||| | ||||| |||||| |
|
|
| T |
15287781 |
tggaacataaaaatcaatttgagtatgattaaa |
15287813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 15262787 - 15262614
Alignment:
| Q |
80 |
tctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttctt |
179 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||||||| |||||| | ||| |||||||||| |||||||||||| | | ||| |||| | |
|
|
| T |
15262787 |
tctttgaacatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcct |
15262688 |
T |
|
| Q |
180 |
ctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
253 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| | |||||| ||||| || |||||||| ||||||| |
|
|
| T |
15262687 |
ctcaattatgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
15262614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 15265448 - 15265631
Alignment:
| Q |
35 |
catccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagta |
134 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||| |||| | | |||| ||| | |||| ||||||||||| |||||||||||||| || | | |
|
|
| T |
15265448 |
catccattccttcaactttcttctctccatttctataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaa |
15265547 |
T |
|
| Q |
135 |
tgttctcacaattacatcaattccattccctcttacaattt--tcttct--caattatgctattaagggtagtccttaaagcctttct |
218 |
Q |
| |
|
|||| | |||||||||| |||| |||| ||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15265548 |
tgttgtaacaattacattaatttcattaccttt----atttcctcttctatcaattatgctattaagggtagtccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 15257069 - 15257141
Alignment:
| Q |
181 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
253 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| | | ||||||| ||||| ||||||| ||||| |
|
|
| T |
15257069 |
tcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtatgattaa |
15257141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 15256924 - 15257012
Alignment:
| Q |
36 |
atccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgag |
124 |
Q |
| |
|
||||||||||||||||| ||||||| | | |||| |||| | |||||| ||| | |||| | |||||||| |||||||||||||||| |
|
|
| T |
15256924 |
atccattccttcaagttccttctccctacttctataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgag |
15257012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 51383526 - 51383131
Alignment:
| Q |
18 |
aatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttca |
117 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||| || || |||||||||||| |||||||| |
|
|
| T |
51383526 |
aatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttca |
51383427 |
T |
|
| Q |
118 |
aaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttc |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||| | ||||||||||| | |||| |||| | |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
51383426 |
aaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttc |
51383327 |
T |
|
| Q |
218 |
tcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaac |
317 |
Q |
| |
|
|||| | |||||||| ||||||||| ||||| |||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
51383326 |
tcatcgcaacataaattccaatatcggtatagttaaatttaagatcatgacatttaaaacaacctataatagactcaccctcatagtaaattgaaggaa- |
51383228 |
T |
|
| Q |
318 |
atccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
416 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||| ||| ||| || ||||| ||||| ||||||||||| |
|
|
| T |
51383227 |
--ccataaaccaatgaccaaatgataacacaatcaagtccatttgatctatatctctagcccacctctcattgacatgatccaaatacattgtattata |
51383131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 11807138 - 11807535
Alignment:
| Q |
19 |
atacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaa |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
11807138 |
atacttcttatcttagcttccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaagtacctcccttatcccaagaaccttcaa |
11807237 |
T |
|
| Q |
119 |
aatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttct |
218 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||||| | || |||||| ||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
11807238 |
aatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcctctcaattatggtattaagggcaatccttaaagcctttct |
11807337 |
T |
|
| Q |
219 |
cattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaaca |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||| || ||||||||| || |||||||||||| |||| || ||||||||||| |||||||| |
|
|
| T |
11807338 |
cattggaacataaaatccaatatcattatatttcgattttaaatcatgacatatagaacaacctataactgaatcattctcatagtaaactgaaggaatg |
11807437 |
T |
|
| Q |
319 |
tccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
416 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||| | |||| ||||| |||| |||||||||||| |
|
|
| T |
11807438 |
tccaaaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattata |
11807535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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