View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_high_3 (Length: 352)
Name: NF4131_high_3
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_high_3 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 27571270 - 27570936
Alignment:
| Q |
17 |
aggattagatgaagctaaatataagaacatgcaaatactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctg |
116 |
Q |
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| T |
27571270 |
aggattagatgaagctaaatataagaacatgcaaatactctaccttctgagataatggccaacagacatggtaaaacaatgcattggtgaaaaagacctg |
27571171 |
T |
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| Q |
117 |
atgtttgttaatgcattttggtatagttgatccactggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagcc |
216 |
Q |
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| T |
27571170 |
atgtttgttaatgcattttgg-atagttgatccactggtagacatactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagcc |
27571072 |
T |
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| Q |
217 |
aactattatctgatatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaac |
316 |
Q |
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| T |
27571071 |
aactattatctgatatatcttcaatttgtaaatcatgagtaggacctgaattatagatcagaagcagtgttaggaggcaagaagagaaccaatattaaac |
27570972 |
T |
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| Q |
317 |
gcaagatcacaaacgactatgaaccacgttttatat |
352 |
Q |
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| T |
27570971 |
gcaagatcacaaacgactatgaaccacgttttatat |
27570936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
| Q |
229 |
atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca |
325 |
Q |
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| T |
27414960 |
atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca |
27415055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 27425216 - 27425326
Alignment:
| Q |
242 |
ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc |
341 |
Q |
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||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | ||||| |
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| T |
27425216 |
ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc |
27425315 |
T |
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| Q |
342 |
acgttttatat |
352 |
Q |
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| T |
27425316 |
acaatttatat |
27425326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 27419645 - 27419754
Alignment:
| Q |
92 |
acaatgcattggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacatactacagacatatctcatgtttcttcagat |
191 |
Q |
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| T |
27419645 |
acaatgcaatggtgaaagaaacctgatgttttttcttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatgtttcttctaat |
27419744 |
T |
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| Q |
192 |
tgacaatgca |
201 |
Q |
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| T |
27419745 |
tgacattgca |
27419754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
| Q |
295 |
aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
352 |
Q |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 27425068 - 27425130
Alignment:
| Q |
99 |
attggtgaaaaagacctgatgtttgttaatgcattttggtatagttgatccactggtagacat |
161 |
Q |
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| T |
27425068 |
attggtgaaagaaacctgatgtttgttattgaattttggtatagctaatgcaatggtagacat |
27425130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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