View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_high_4 (Length: 286)
Name: NF4131_high_4
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 1182716 - 1182443
Alignment:
| Q |
18 |
aatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgatgcat-----ttcccatcttgctagctttaaactccattcctcagaaata |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
1182716 |
aatctgtcatatcaaacttttctagcagttcaccaatgtacttctgatgatgcataacctttcccatcttgctagctttaaactccattcctaagaaata |
1182617 |
T |
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| Q |
113 |
agagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182616 |
agagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattc |
1182517 |
T |
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| Q |
213 |
acatataattatatcattgtgatatcactttcactcaagttctgaacatacataccatattcagctttgcatct |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1182516 |
acatataattatatcattgtgatatcactttcactcaagttctgaacatacataccatattcaactttgcatct |
1182443 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 32368905 - 32369018
Alignment:
| Q |
107 |
gaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagc |
206 |
Q |
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|||||| || ||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32368905 |
gaaatatgatagtcttcctaaataagtcatttcaaattcacactgcatagtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagg |
32369004 |
T |
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| Q |
207 |
tcattcacatataa |
220 |
Q |
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|||| |||||||| |
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| T |
32369005 |
tcatctacatataa |
32369018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 286
Target Start/End: Original strand, 8169245 - 8169418
Alignment:
| Q |
108 |
aaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagct |
207 |
Q |
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|||||||| | | ||||||| || ||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||| | |
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| T |
8169245 |
aaataagaaaatcttcctaagtcggtcattttaaattcacactgcattgtgtgtttgaatttctcaatctcactttaattgcttccagttactaatagat |
8169344 |
T |
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| Q |
208 |
cattcacatataattatatcattgtgatatcactttcactcaagttctgaacatacataccatattcagctttgcatct |
286 |
Q |
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||| |||||| ||| |||| |||||||| | |||| | |||||||||||| ||||||||| |||||||||||||| |
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| T |
8169345 |
catccacata-aat----acattatgatatcagtctcacccgagttctgaacatgcataccatactcagctttgcatct |
8169418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 26076068 - 26075976
Alignment:
| Q |
107 |
gaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttac |
199 |
Q |
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||||||||| | | |||| ||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26076068 |
gaaataagataatcttcccaaaccagtcatttcaaactcacacttcatagtgtgtttgaacttctcaatctcacttggattacttccagttac |
26075976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 12368411 - 12368312
Alignment:
| Q |
121 |
ttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataa |
220 |
Q |
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|||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||| | || ||||| |||||||| |
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| T |
12368411 |
ttcccaaatcagtcatttcaaactcacacttcatagtgtgtttgaacttctcaatctcagttggattacttccagttactagtaagtcatttacatataa |
12368312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 4958885 - 4958963
Alignment:
| Q |
121 |
ttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttac |
199 |
Q |
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|||| |||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
4958885 |
ttcccaaatcaatcatttcaaactcacacttcatagtgtgtttgaacttctcaatctcacttggattacttctagttac |
4958963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 5242882 - 5242769
Alignment:
| Q |
107 |
gaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagc |
206 |
Q |
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|||||| || ||| |||| ||||||| |||||||||||||||| ||| |||||||||||||| ||||||||| | |||| ||||||| |||||||| |
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| T |
5242882 |
gaaatatgacagtcttccaaaatcagacatttcaaattcacaccgcatagtgtgtttgaacttttcaatctcattacgattgcttccaggcaccaatagg |
5242783 |
T |
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| Q |
207 |
tcattcacatataa |
220 |
Q |
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|||| |||||||| |
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| T |
5242782 |
tcatctacatataa |
5242769 |
T |
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