View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_low_10 (Length: 251)
Name: NF4131_low_10
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22555312 - 22555555
Alignment:
| Q |
1 |
ccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctgagnnnnnnnngtcatttccatgtatta |
100 |
Q |
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| T |
22555312 |
ccaaaaacaccttaacgatagttaactaccgttgatttataactagaaaaccgaaggtagtttactaccgctgaatttttttggtcatttccatgtatta |
22555411 |
T |
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| Q |
101 |
ttaggaaacattggctgtcaaaaaagcaacggtcttgggcttaagcctgtttaaccaacatggtgttcgactatcacaagcccggtggtccaaattcata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22555412 |
ttaggaaacattggctgtcaaaaaagcaacggtcttgggcttaagcctgtttaaccaacatggtgttcgactatcacaagcccagtggtccaaattcata |
22555511 |
T |
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| Q |
201 |
tttgtaacgcattttaagagtagaaatgacccctccctttgctt |
244 |
Q |
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| T |
22555512 |
tttgtaacgcattttaagagtagaaatgacccctccttttgctt |
22555555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 4984053 - 4983993
Alignment:
| Q |
14 |
aacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctga |
74 |
Q |
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| T |
4984053 |
aacgatagttaactaccgctaacttataactagaaaatcgacggtagttaactaccgctga |
4983993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 30513861 - 30513915
Alignment:
| Q |
19 |
tagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg |
73 |
Q |
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| T |
30513861 |
tagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctg |
30513915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 30554201 - 30554255
Alignment:
| Q |
19 |
tagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg |
73 |
Q |
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|||||| |||||| ||| ||||||||||||||| || ||||||| |||||||||| |
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| T |
30554201 |
tagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctg |
30554255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 1317622 - 1317679
Alignment:
| Q |
17 |
gatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctga |
74 |
Q |
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| T |
1317622 |
gatagttaactaccgctgatttataactaaaaaactgatgatagttaactaccgctga |
1317679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 9545105 - 9545044
Alignment:
| Q |
14 |
aacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctgag |
75 |
Q |
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|||| |||||| |||||| |||||||||||| ||||| ||| |||| || |||||||||||| |
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| T |
9545105 |
aacggtagttaactaccgctgatttataactggaaaatcgacggtaattaactaccgctgag |
9545044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 22996968 - 22996923
Alignment:
| Q |
84 |
gtcatttccatgtattattaggaaacattggctgtcaaaaaagcaa |
129 |
Q |
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||||||||||||||||||||| ||||||||| ||| |||| ||||| |
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| T |
22996968 |
gtcatttccatgtattattagaaaacattggttgtgaaaatagcaa |
22996923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 23791433 - 23791478
Alignment:
| Q |
84 |
gtcatttccatgtattattaggaaacattggctgtcaaaaaagcaa |
129 |
Q |
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||||||||||||||||||||| ||||||||| ||| |||| ||||| |
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| T |
23791433 |
gtcatttccatgtattattagaaaacattggttgtgaaaatagcaa |
23791478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28799020 - 28798964
Alignment:
| Q |
17 |
gatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg |
73 |
Q |
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|||||||| |||||| ||| ||||||||||||||||| ||||||| ||||| |||| |
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| T |
28799020 |
gatagttaactaccgctgacttataactagaaaaccggcggtagttaactacagctg |
28798964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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